Phyllotaxis
the spirals are counted, not admired
Concept

Description versus mechanism — where it appears

The difference between a rule that reproduces a form and a claim about what produces it. A description with enough parameters can be made to fit anything, so the two are told apart by what each forbids rather than by what each reproduces.

Named by 15 essays across 3 fields — each of them below, with the objects they name alongside it.

An L-system after 4 rewrites of two rules. X → F[+X]F[-X]+X and F → FF, walked by a turtle turning 22.5°. 130 segments, and not one of them knows anything about light, water or auxin.

L-systems describe, they do not explain

Two rewriting rules and a turtle produce something indistinguishable from a plant, and there is no plant in it — no light, no water, no auxin, no mechanics. That is worth demonstrating precisely because the output is so convincing.

branching · Lsystem Three disturbances, three places to get in. The rule reads its neighbours, builds a profile of the energy at every azimuth, takes the least of it, and records a position. jostle noise enters at the neighbours; placement noise enters at the record. Two of the three are upstream of the choice and can change which minimum is taken; the third is downstream and never can.

A growing organ is part of the rule

Every model in the earlier essays places primordia on a surface and then treats the surface as furniture. But the surface grows between one placement and the next, and that growth reaches the rule through the only channel it has — where the neighbours are. What looks like a boundary condition turns out to be a term in the model.

mechanism · Mechanism claims The two trees this site draws, at 30° and 32° to a side, against the cost's 37.47° and 37.47°. Two trees of 63 segments each, 5 generations deep and 31 junctions apiece, with every junction's radii taken from r₀³ = r₁³ + r₂³ exactly and every junction's angle taken from a constant. Read as an exponent through cos(θ/2) = 2^(2/p − 1), the drawn angles say 2.5237 and 2.6239, in pictures whose widths are built at exactly 3. The cost that fixed those widths wants 37.47° and 37.47° at this daughter ratio, 74.93° in total, and the misses cost 0.573% and 0.292% of the network — which is why a fixed angle can sit in a figure about a minimisation and never look wrong.

The trees drawn at no angle

Two branching figures in these essays set every junction's radii from the cube law exactly and every junction's angle from a constant nobody derived. Read as exponents the drawn angles say 2.52 and 2.62, in pictures whose widths say exactly three — and at a lopsided fork the drawing puts a daughter thirty-four degrees from where the same cost puts it.

branching · Fork angle One tree sized for flow and for stress, with each branch 2^(−1/2) the length of its parent. The same symmetric tree, 8 generations deep, each generation's branches 2^(−1/2) the length of the one before and turned 30° at every fork, sized two ways and drawn to one trunk width. On the left each branch's radius cubed is proportional to the tips it feeds — Murray's flow rule — and every junction conserves r³. On the right each branch is sized so that the same load on every tip bends it to the same stress at its base, radius cubed proportional to the sum of its lever arms to its tips; its trunk junction conserves r to the power 1.967, its outermost junctions 1.349, against a deep-tree limit of 2.000. The two trees thin at different rates from the same trunk.

A cube law with a lever arm

Murray's exponent of three comes from moving fluid for the least work, and Da Vinci's two has had no derivation here, only the name of the mechanical answer. Size every branch so that the same wind on every tip bends it to the same stress, and a junction conserves r to the power 3/(1 + log₂(1/λ)), where λ is how much shorter each branch is than its parent. A crown that fills a plane gives exactly two; halving lengths gives one and a half; no shortening gives three. Murray's flow rule gives three at every λ, so the lengths of a tree's branches say which mechanism sized it.

branching · Murray One planar crown sized for a load on its tips and for the weight of its own wood. The same symmetric crown, 9 generations deep, each branch 2^(−1/2) the length of its parent and turned 30° at every fork, sized so that every branch is bent to one stress, drawn to one trunk width. On the left the load is on the tips and the trunk junction conserves r to the power 1.980; on the right the load is the weight of the wood, found by iterating the radii until they stop moving, and the trunk junction conserves r to the power 0.969. A crown sized for its own weight thins much faster from the trunk, because a branch's weight grows with the square of its radius.

A crown that carries its own wood

Sizing every branch so that equal loads on the tips bend it to one stress gives a crown filling a plane Da Vinci's exponent of two. Move the load onto the wood and the sizing becomes a fixed point, because a branch's load now depends on the radii being solved for. Under the wind on its wood a planar crown still conserves two, but only as a limit its trunk is two tenths short of at fifteen generations. Under its own weight it conserves one — radius rather than area, the stress-similarity law that radius goes as length squared — and a crown carrying leaves and wood reads the leaves' two near its twigs and the wood's one at its trunk, with the handover set by how much of the trunk's load the wood carries.

branching · Murray The number of growing points after each season, for buds that wait no season, one, two, three or four. From one mature apex, each season every mature apex makes a new bud, and a bud branches only after it has waited its delay. With no delay the counts run 1, 2, 4, 8, 16, 32, 64, 128, 256, 512 and settle into growing by 2.0000 a season; with one season the counts run 1, 2, 3, 5, 8, 13, 21, 34, 55, 89 and settle into growing by 1.6180 a season; with two seasons the counts run 1, 2, 3, 4, 6, 9, 13, 19, 28, 41 and settle into growing by 1.4656 a season; with three seasons the counts run 1, 2, 3, 4, 5, 7, 10, 14, 19, 26 and settle into growing by 1.3803 a season; with four seasons the counts run 1, 2, 3, 4, 5, 6, 8, 11, 15, 20 and settle into growing by 1.3247 a season. On a logarithmic axis each settles into a straight line whose slope is its growth rate, the positive root of x^(d+1) = x^d + 1.

A count set by a delay

An L-system describes a plant and forbids nothing, because none of its parameters is anything a plant has. One branching grammar is the exception: a mature apex makes a new bud every season, and a bud waits d seasons before it branches. Its counts grow at the root of x^(d+1) = x^d + 1, a delay of one season gives Fibonacci's numbers and nothing else does, and the fourth count already separates a one-season wait from every longer one. So a Fibonacci count in a branching plant is a measurement of how long its buds wait. It is also a fragile one: if one bud in ten waits two seasons instead, eleven counts in a row come out Fibonacci's three times in a thousand.

branching · Lsystem A period of 5, and the two classes that are not with the rest. The same wrecked stem, folded on the lag it kept: one row per residue class, each drawn at the mean displacement of its own organs against the level the rest of them share. The bar through each row is the spread inside that class, and the widest of them is 10.28° — so within a class the displacement is a constant. three classes sit at the common level. The two that do not sit at 143.0° and -147.6°, equal and opposite to within 3.2 per cent, and they are neighbouring residues. The stem's own divergence is 137.97°, so an exception is one organ's step.

The damage has a period

Every wrecked stem in the census has had two numbers read out of its displacement profile and the profile itself read out of none of them. Folded on the lag the stem kept, twenty-five of the thirty are constant inside each residue class to between 0.12° and 6.09°.

mechanism · Damage shape A period of 8, and the two classes that are not with the rest. The same wrecked stem, folded on the lag it kept: one row per residue class, each drawn at the mean displacement of its own organs against the level the rest of them share. The bar through each row is the spread inside that class, and the widest of them is 0.87° — so within a class the displacement is a constant. six classes sit at the common level. The two that do not sit at 134.3° and -134.2°, equal and opposite to within 0.0 per cent, and they are neighbouring residues. The stem's own divergence is 137.44°, so an exception is one organ's step.

One level and two exceptions

Inside a wrecked stem's period most residue classes sit at one level and a couple do not. On seventeen of the thirty cuts the exceptions are exactly two, equal and opposite to within five per cent — and on all seventeen they are neighbouring residues, which was not looked for.

mechanism · Damage shape How constant the displacement is inside one residue class. One row per wrecked cut in the census, drawn at the widest spread found inside any one residue class when the profile is folded on the lag that stem kept. 25 of 30 rows sit between 0.12 and 6.09 degrees, which on a quantity whose between-class differences run past a hundred and fifty degrees is a constant. The five that do not sit from 10.3° up. There is nothing in between, so the line drawn at 10° could have been drawn anywhere in a wide interval.

The plateau was a prediction

The search for a reference organ found that the largest displacement above a hole is a plateau rather than a peak, and reported it as a failure. A profile constant on each of k residue classes has exactly k levels, so its maximum is attained by a whole class — a ninth to a quarter of every window, forever.

mechanism · Damage shape How far above the hole the damage becomes a pattern. One row per wrecked cut, drawn at the first organ from which every residue class stays at its own level for the rest of the run. On the 25 rows that reach it at all, it runs from 7 to 303 organs above the removed one; five rows never reach it inside the 300 organs each run is continued for. Below that point the stem is still moving, and the displacement of the first organ after the cut — the quantity that tells a cheap removal from an expensive one — is measured there. Above it, nothing changes again.

Two regimes above a hole

Below the repeating pattern there is a transient, and the boundary between them is measurable: the first organ from which every class stays at its own level runs from 7 to 303 organs above the hole on twenty-five of thirty cuts, and five never reach it inside the run.

mechanism · Damage shape Which chain the backward exception sits on, over the census. Chains are numbered from the removed organ, so chain 0 is the chain the hole was on and chain 2 is two organs along it. The exchange is at the hole's own chain on 10 of the 17 rows that carry one, against 2.8 rows for a chain drawn at random from each row's own period. That is far more often than anywhere else and it is not every row, so the position is a tendency rather than a rule — and the file says so rather than rounding it up.

Which chains changed places

A wrecked stem's displacement profile is a set of levels, one per chain, with two of them out of line — equal and opposite, on neighbouring chains. Nothing said which two. They are the hole's own chain and the one below it, on ten of the seventeen cuts that carry a pair.

mechanism · Damage shape A period of 8, with the hole's own chain at the top. Each mark is one residue class of the displacement profile, placed round a ring at its own residue, with the chain the removed organ sat on at the top. The radius is how far that class sits from the level the rest of them share. six of the eight classes sit together at the middle ring; two do not, and on this row they are one pair, equal and opposite to within a twentieth. The forward one is chain 7 and the backward one is chain 0, one residue above it, which is the order every row of the census puts them in.

One way round, seventeen times

The two chains that change places in a wrecked stem are adjacent, which is symmetric and says nothing about direction. Label them by lag from the hole and the one displaced forwards is always the lower of the two — on every row of the census, without an exception.

mechanism · Damage shape A divergence that does not move across the 5/8 band. Measured at every rise of a band on the golden branch, where a counter returns 5 and 8 spirals throughout. The settled divergence moves by 0.0469 degrees across the whole band, which is a fraction of the azimuth grid step and a fortieth of the slide across the rung it sits in. The ratio of the two contact steps does move: it falls to 1.0013 and the ordering changes hands at a rise of 0.0156, so above that rise the shorter step belongs to the 5 family and below it to the 8 family. Two of the three quantities that vary along a rung are therefore held here and the third is not, which is what makes the ends of this band a matched pair.

The angle is not the actor

Cut an organ out of two stems that settled on the same divergence and return different counted pairs, and the family left standing is different at every one of the four pairs where both stems wreck. The angle is held to a hundredth of a degree underneath.

cylinder · Same angle Which rungs of the golden branch share a divergence. One row per pair of rungs. A pair whose divergence ranges overlap has a rise on each rung where the rule settles on the same angle; a pair whose ranges do not overlap has none, whatever the search. On this branch four of six pairs match, and three of those match to 0.0000° — the same value of a quantity read on a grid of 1,536 azimuths. The rises differ by factors of 1.48 to 5.09, so the design holds one angle while changing everything the rise controls.

The last of three quantities

The pair, the divergence and the step ordering move together when the rise is swept, and for a long time no result could be attributed to any of them. Two designs later, two are ruled out as sufficient and the third has never been held still — because holding it is what a rung already does.

cylinder · Same angle Four accounts of which bands speckle, scored on the three cut whole. Each candidate explanation of why one band's cuts change the family they keep and another's do not, against what the three bands cut whole actually do. A tick is an account that puts that band on the side the sweep does. The branch the band sits on is right on all three; the size of the counted pair, the number of wrecking offsets and how much of its rung the band spans are each wrong on two. Three bands can eliminate and cannot confirm, and this eliminates three of the four.

The branch is what is left

Four accounts of why one band's cuts change what they keep and another's do not were written down before a third band was cut. Three of them are now wrong on a band each, and the survivor is the one with no mechanism behind it.

cylinder · Rung interior

Named alongside it

The objects these essays reach for when they reach for this one.

Claim testingHonest limitsAblationControlMechanismNegative resultRigid hopMeasurementPredictionLattice offsetUnderdeterminationBranch

All concepts