Underdetermination — where it appears
Droplets with no biology in them
Douady and Couder dripped magnetised ferrofluid into a dish of silicone oil, and got spiral phyllotaxis with Fibonacci parastichy numbers out of a system containing no cells, no genes and no plant. That is the strongest evidence the pattern is physics — and the clearest warning about what a model can claim.
L-systems describe, they do not explain
Two rewriting rules and a turtle produce something indistinguishable from a plant, and there is no plant in it — no light, no water, no auxin, no mechanics. That is worth demonstrating precisely because the output is so convincing.
What a mechanism would have to show
This site says of every model it draws that reproducing a pattern is not explaining it. That is easy to repeat and hard to make precise. Here it is made precise — a list of what an account of phyllotaxis would have to establish, with each item marked according to whether the models on this site establish it.
Named alongside it
The objects these essays reach for when they reach for this one.
AuxinBranchRepulsionAttractorBifurcationDescription versus mechanismEvidenceExplanationFalsifiabilityFerrofluidL-systemsLadder