Concept

Underdetermination — where it appears

The situation in which the available observations are equally consistent with rival accounts. Much of the phyllotaxis literature is in it: a mechanism and a description reproduce the same pattern, so agreement with the pattern chooses neither.

Named by 31 essays across 6 fields — each of them below, with the objects they name alongside it.

An L-system after 4 rewrites of two rules. X → F[+X]F[-X]+X and F → FF, walked by a turtle turning 22.5°. 130 segments, and not one of them knows anything about light, water or auxin.

L-systems describe, they do not explain

Two rewriting rules and a turtle produce something indistinguishable from a plant, and there is no plant in it — no light, no water, no auxin, no mechanics. That is worth demonstrating precisely because the output is so convincing.

branching · Lsystem
Two runs of the same rule from unrelated starting angles. Both settle at 137.0°, within 0.5° of the golden angle, from seeds 166° apart.

Droplets with no biology in them

Douady and Couder dripped magnetised ferrofluid into a dish of silicone oil, and got spiral phyllotaxis with Fibonacci parastichy numbers out of a system containing no cells, no genes and no plant. That is the strongest evidence the pattern is physics — and the clearest warning about what a model can claim.

emergence · Analogue
Which patterns grow on a ring of circumference 0.80. Modes 2 to 8 have positive growth rates and mode 4 is fastest. Integrating the full equations from a disordered start gives 4 peaks.

What a mechanism would have to show

Every model of phyllotaxis comes with the caveat that reproducing a pattern is not explaining it. That is easy to repeat and hard to make precise. Here it is made precise — a list of what an account of phyllotaxis would have to establish, with each item marked according to whether the models drawn in these essays establish it.

mechanism · Mechanism claims
The three weights at an exponent of 2 and 3: one closes a triangle and one is a straight line. A branch point minimising a weighted sum of three lengths has an interior solution only when the three weights close a triangle, and the weight on a segment here is its own cross-section. At an exponent of 3 the three areas clear that condition by 0.4126, and the triangle they close is what the two fork angles are read off. At an exponent of 2 the parent's area is exactly the daughters' areas summed — that is what area conservation says — so the slack is -4.44e-16, the triangle collapses onto a line, and the fork closes to 0.0000 degrees. Leonardo's rule does not predict a different angle here; it predicts no angle.

A rule that predicts everything

Leonardo's rule says a fork conserves cross-section, and cross-section is exactly the weight the branch point is minimised against. So the three weights land on the boundary of the triangle inequality, the cosine comes out at one to the last bit, and the rule predicts no angle at all — and the free constant its own derivation leaves behind then walks the prediction across every angle a fork could have.

branching · Fork angle
Both statistics, on the same stems, at a rise of 0.005. Five seeded stems at each disturbance, held at a fixed rise. Bars are how many returned the pair the position counter finds; open portions are refusals. The pair comes out from 0.1 to 0.25, and across that whole range the lag-one correlation of the same sequences is -0.33, -0.58, -0.59 — decisive, negative and flat. There is no trade between the two: one stem supplies both. Below the window the sequence has locked onto the sampling grid and is a cycle rather than a sample; above it there is no lattice left, at 117° of scatter.

What a refusal does not say

The readout can decline for four different reasons — too quiet, too disturbed, too fast, or a window in the wrong place — and a stem that returns nothing does not say which. That is the third time this thread has failed to close the mixture problem, and the first time the failure has a shape.

wrong · Survey spec
One spiral at 3.20× per turn, marked at equal intervals of time under four rate laws. The curve is identical in all four panels — every mark lies on r = W^(θ/2π) exactly, whichever clock put it there — and the marks are not. Under a constant angular rate the three whorls hold 14, 13, 14 marks; under a constant length added the three whorls hold 3, 9, 29 marks; under a constant area added the three whorls hold 1, 3, 37 marks; under a constant volume added the three whorls hold 1, 1, 39 marks. The growth factor is a rate per turn of the shell's own coiling, and a turn is not a unit of time; the whole of what an animal's growth rate means is in the spacing of these marks and none of it is in the curve.

A spiral with no clock

The growth factor a shell's curve gives up is a rate per turn of the shell's own coiling, and a turn is not a unit of time. Four clocks — the aperture advancing at a constant angular rate, adding a constant length, a constant area, a constant volume — trace the identical curve: every mark one of them leaves lies on r = W to the power theta over two pi exactly, so a fit through any of them returns the same factor. What differs is where the marks are, and the difference is enormous: at 3.2 per turn the outermost of three whorls holds 33.4, 71.0, 90.3 and 97.0 per cent of the record. It also breaks the instrument. The routine that recovers a growth factor unwraps the angle by assuming successive points advance less than half a turn, and five of the twenty readings here leave gaps past that — returning 3.33 where the curve was built at 3.20, and 8.19 where it was built at 6.85.

shells · Spiral
Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by four different definitions. Counting the organs that carry half the profile gives 33, 12, 3, 2, 1. Counting the organs that carry nine tenths gives 182, 120, 30, 8, 3. Counting the organs that carry ninety-nine hundredths gives 284, 263, 149, 54, 9. Counting the organs that carry the weighted mean lag gives 68, 45, 21, 14, 11. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.

Four ways to count a neighbourhood

How deep does the placement rule look? Counting the organs that carry nine tenths of its profile gives 182 down to 3 as the falloff steepens. Counting the ones that carry half gives 33 down to 1. The weighted mean lag gives 68 down to 11. The four disagree by an order of magnitude about the size and agree exactly about the order.

mechanism · Noise colour
The number of growing points after each season, for buds that wait no season, one, two, three or four. From one mature apex, each season every mature apex makes a new bud, and a bud branches only after it has waited its delay. With no delay the counts run 1, 2, 4, 8, 16, 32, 64, 128, 256, 512 and settle into growing by 2.0000 a season; with one season the counts run 1, 2, 3, 5, 8, 13, 21, 34, 55, 89 and settle into growing by 1.6180 a season; with two seasons the counts run 1, 2, 3, 4, 6, 9, 13, 19, 28, 41 and settle into growing by 1.4656 a season; with three seasons the counts run 1, 2, 3, 4, 5, 7, 10, 14, 19, 26 and settle into growing by 1.3803 a season; with four seasons the counts run 1, 2, 3, 4, 5, 6, 8, 11, 15, 20 and settle into growing by 1.3247 a season. On a logarithmic axis each settles into a straight line whose slope is its growth rate, the positive root of x^(d+1) = x^d + 1.

A count set by a delay

An L-system describes a plant and forbids nothing, because none of its parameters is anything a plant has. One branching grammar is the exception: a mature apex makes a new bud every season, and a bud waits d seasons before it branches. Its counts grow at the root of x^(d+1) = x^d + 1, a delay of one season gives Fibonacci's numbers and nothing else does, and the fourth count already separates a one-season wait from every longer one. So a Fibonacci count in a branching plant is a measurement of how long its buds wait. It is also a fragile one: if one bud in ten waits two seasons instead, eleven counts in a row come out Fibonacci's three times in a thousand.

branching · Lsystem
The block is one of the two numbers, and not always the smaller. Every lattice a single organ was removed from, one row each: golden, rise 0.020 carrying 3/5; golden, rise 0.013 carrying 5/8; golden, rise 0.008 carrying 5/8; golden, rise 0.005 carrying 8/13; Lucas, rise 0.020 carrying 4/7; Lucas, rise 0.013 carrying 4/7. The two open ticks on each line are that lattice's own parastichy numbers; the filled dots are the blocks the stems that never recovered settled into, one per offset that failed. The claim this table was built to test is that the block is the smaller of the two, which held at the two rises it was first measured at. It does not hold here: 3/5 gives 5, 5/8 gives 5 and 8, 4/7 gives 4 and 7. What survives is weaker and still worth something — every filled dot but 1 sits on one of that row's own ticks, so the orbit carries a count of the lattice it was cut from, and which of the two it carries is decided by the offset rather than by the pattern.

Two accounts of one number

A stem that never recovers from an ablation settles into a repeating block whose length was the smaller of its two spiral counts, at both arrangements it had been measured at. Two different explanations predicted exactly that and could not be told apart. Swept across four rises on the ordinary branch the premise itself fails: at one arrangement the block is the larger number, at another both appear, and the rule that seemed to be there was two measurements.

cylinder · Attractor
What removing both walls does that removing each does not. One row per lattice, drawn at the difference between how far the next organ moves when both walls of the slot are removed and how far the two removals move it separately added together. Zero would mean the walls act independently. five of six lattices are more than 10° from it, three above and two below — so the pair is reliably not the sum of its parts and is not reliably larger than it either. On four of them the pair throws the next organ past the 45° that separates a cheap removal from an expensive one, which neither wall alone comes near.

Six lattices were not enough

The interaction between the two walls of a slot came back at −25.8° to +132.9° on six lattices, three above zero and three below, with no ordering by rise, by counted pair or by branch. A quantity that looks free on six rows is usually a quantity that has been sampled at six rows.

mechanism · Both walls
Which rungs of the golden branch share a divergence. One row per pair of rungs. A pair whose divergence ranges overlap has a rise on each rung where the rule settles on the same angle; a pair whose ranges do not overlap has none, whatever the search. On this branch four of six pairs match, and three of those match to 0.0000° — the same value of a quantity read on a grid of 1,536 azimuths. The rises differ by factors of 1.48 to 5.09, so the design holds one angle while changing everything the rise controls.

Two rungs, one angle

Five pairs of rises settle on the same divergence while a counter returns different pairs at them, and four of the five agree to 0.0000° — the same value of a quantity read on a grid of 1,536 azimuths. The rises differ by factors of 1.48 to 5.09.

cylinder · Same angle
A divergence that does not move across the 5/8 band. Measured at every rise of a band on the golden branch, where a counter returns 5 and 8 spirals throughout. The settled divergence moves by 0.0469 degrees across the whole band, which is a fraction of the azimuth grid step and a fortieth of the slide across the rung it sits in. The ratio of the two contact steps does move: it falls to 1.0013 and the ordering changes hands at a rise of 0.0156, so above that rise the shorter step belongs to the 5 family and below it to the 8 family. Two of the three quantities that vary along a rung are therefore held here and the third is not, which is what makes the ends of this band a matched pair.

The angle is not the actor

Cut an organ out of two stems that settled on the same divergence and return different counted pairs, and the family left standing is different at every one of the four pairs where both stems wreck. The angle is held to a hundredth of a degree underneath.

cylinder · Same angle
Which lag survives, at every lattice and every offset. A row for each of twelve lattices and a column for each offset an organ is removed at, with the lag whose hop survived written in the cell. 30 cells never repair. The lag left standing is one of the two contact families at 29 of them, and at 17 it is the second shortest step on the lattice rather than the shortest, which is what refuses the reading that a rule holds its nearest neighbours. The ringed cells are the five the offset rule gets wrong. Two lattices carry no cells at all because no single removal wrecks them.

One offset, two answers

Which contact family a wrecked stem keeps is decided by where the cut landed, at twenty-five of thirty offsets, by the simplest rule anybody would write down. It is refuted by two runs: the same counted pair, the same offset, two different rises, and two different surviving families.

emergence · Ablation
Which rungs of the golden branch share a divergence. One row per pair of rungs. A pair whose divergence ranges overlap has a rise on each rung where the rule settles on the same angle; a pair whose ranges do not overlap has none, whatever the search. On this branch four of six pairs match, and three of those match to 0.0000° — the same value of a quantity read on a grid of 1,536 azimuths. The rises differ by factors of 1.48 to 5.09, so the design holds one angle while changing everything the rise controls.

The last of three quantities

The pair, the divergence and the step ordering move together when the rise is swept, and for a long time no result could be attributed to any of them. Two designs later, two are ruled out as sufficient and the third has never been held still — because holding it is what a rung already does.

cylinder · Same angle
Which family survives, along the 5/8 rung. The family a wrecked stem keeps, at every offset that wrecks and every rise on one rung. A counter shown any of these stems returns 5 and 8 spirals, at all twelve rises, so nothing in the pair distinguishes the columns. The cells say otherwise: at an offset of 4 the stem keeps the 5-family at the coarse end of the rung and the other one at the fine end. The offsets that wreck at all grow from 1 to 5 as the rise falls, because the front deepens, and the extra offsets are the ones that keep the larger number. So the rule stated over the offset alone is a rule with the rise left out of it.

One rung, two answers

The offset accounts for twenty-five wrecked stems of thirty and is refuted by a single pair of runs that differ in nothing but the rise. Sweep one rung at a thousandth and the refutation stops being an anomaly: the same offset on the same lattice keeps one family at the coarse end and the other at the fine one.

emergence · Ablation
A prediction and its opposite, scored on the same rows. The reading under test said the family whose member was removed is the one that breaks. Scored across every wrecked offset where the removed organ lies on exactly one contact chain — 9 of 30, the other 21 being silent because the organ lies on neither — it is right no times and its opposite is right nine. A chain that loses a member does not stop existing: the organs above the hole are still spaced at that lag and the rule that placed them is still minimising the same sum, while the other chain has lost the organ its members were positioned against.

The family that lost a member

The offset rule restated in the arrangement predicts that the chain whose organ was taken is the chain that breaks. Scored on the nine offsets where the question can be asked, it is right none of the time and its opposite is right all nine.

emergence · Ablation
The families left standing, on both sides of every handover. One row per band, with every offset cut at rises spread across it and always at both ends and at the handover itself. The last column is every family left standing anywhere on that band. On three of the four bands that wreck at all it is a single family, unchanged across a rise at which the two contact steps swap places — so the step ordering is not what decides which family survives, and the result now rests on four counted pairs rather than on two. The shortest-hop reading scores 44 of 114 across the whole set, which is what a reading looks like when the quantity it is stated over is not in the mechanism.

The ordering on six bands

A hundred and fourteen wrecked cuts across four bands, and at every offset of every one of them the family left standing is the same immediately above the handover and immediately below it. Where the answer does change — on the widest band, at three offsets — it changes somewhere else.

cylinder · Rung interior
The two contact steps change places inside the 5/8 rung. Measured at every rise on one rung, where a counter returns 5 and 8 spirals throughout. The settled divergence slides from 136.6406 to 137.8672 degrees. The ratio of the two contact steps falls to 1.0131 at a rise of 0.016 and the ordering changes hands at 0.015: above it the shorter step belongs to the 5-family and below it to the 8-family. Neither quantity is available to a counter, which is shown positions and reports a pair, and both of them move while that pair does not.

The shortest hop was a coin flip

The reading that a wrecked stem keeps its shortest hop was refuted at twelve of twenty-nine across the census. Re-scored along a single rung, where the counted pair is held and the step ordering reverses, it is right at sixteen of thirty-one — which is not a refutation but an absence of information.

emergence · Ablation
Every wrecked offset, and whose neighbour was removed. Each row is a stem that never repaired, with the family of the organ that was taken and the family that survived. An organ five places back on a stem counted at 5 and 8 spirals lies on the tip's five-chain, so the question can be asked there; an organ four places back lies on neither chain and it cannot. Of 30 wrecked offsets in the census, 9 remove a member of exactly one family and 21 remove a member of neither. On every one of the 9 the family that lost a member is the family left standing, which is the opposite of what the reading predicted.

The organ that was nobody's neighbour

Twenty-one of the thirty wrecked offsets remove an organ that lies on neither contact chain through the tip. The reading that explains the other nine has nothing to say about them, and the honest thing is to say so rather than to widen the definition until it does.

emergence · Ablation
Every transition as the rise falls. The pair climbs 1/2 → 2/3 → 3/5 → 5/8 → 8/13. Consecutive transitions are 0.381, 0.382, 0.382 of the previous rise — 1/φ² is 0.3820.

A stem too fine to settle

Below a rise of about four thousandths the counter stops returning contact families and starts returning pairs like 2/13 and 13/24. Lengthening the stem does not fix it. That is a ceiling on every sweep this collection runs up the ladder, and it has never been written down.

emergence · Noise colour
Offset 7 across the 8/13 band, rise by rise. The family this one offset keeps at each of the band's 126 rises, coarse on the left. It wrecks at 126 of them and keeps the 4-family and the 8-family at different rises. The ticks below mark one islands — runs of 2 rises where the coarse family comes back inside the fine one. The handover is the taller rule and the change of answer is nowhere near it.

Three offsets, three crossings

The claim the band design rests on is that the survivor does not change where the two contact steps change places. It holds at full resolution: nineteen changes and not one at the handover. Where they are is three different rises, eight, nineteen and twenty-nine below it.

cylinder · Rung interior
Which family survives, along the 5/8 rung. The family a wrecked stem keeps, at every offset that wrecks and every rise on one rung. A counter shown any of these stems returns 5 and 8 spirals, at all twelve rises, so nothing in the pair distinguishes the columns. The cells say otherwise: at an offset of 4 the stem keeps the 5-family at the coarse end of the rung and the other one at the fine end. The offsets that wreck at all grow from 1 to 5 as the rise falls, because the front deepens, and the extra offsets are the ones that keep the larger number. So the rule stated over the offset alone is a rule with the rise left out of it.

One rise per rung is a sample

Every census on this site takes one rise from each rung, because the question was always which pair. Any rule later scored on those rows inherits a variable that was never varied — and two of this collection's results turn out to be about the sampling as much as about the rule.

emergence · Survey spec
The two spiral families a counter finds between 0.68 and 0.92 of the radius. 34 spirals one way and 55 the other, found from the point positions alone — the counter is never told the divergence angle.

What a count cannot decide

A spiral count is the measurement this whole subject is built on, and it is deliberately blind to everything that varies inside a rung. Four results this collection now holds are results about that blindness rather than about the arrangements.

emergence · Counting
Where the deeper rule changes hands, and where it never does. One row per rise, with the contact numbers on the left and what the comparison does on the right. At the coarsest the deeper rule wins at both ends and loses in the middle; at the middle rise it wins throughout; at the finest it crosses once, from losing to winning. The contact scale runs over a factor of 2.6 across these three rises and the behaviour is not a translation of one curve — it is three different curves. That refutes a corner fixed at a short correlation, and it does not by itself establish one that tracks the contacts.

The panel with no corner

Sweeping the rise gave three shapes where one was expected, and the middle one is the informative panel: at the 5/8 contact scale the deeper rule wins at every correlation and there is no crossing to locate. That is either a fact about the lattice or a fact about the pair of exponents, and one measurement separates them.

emergence · Noise colour

The column that cost no stems

Every table in this collection records the rise a stem was grown at. None records where inside its own rung that rise sat, and the fraction turns out to be computable from numbers already written down — which makes it the cheapest column anybody here has ever added and the one that changes the most about how the tables read.

emergence · Survey spec

The side the census sat on

Eight of the ten lattices the ablation census wrecks at were grown past their rung's handover, one before it, and one so close that the ordering it quotes differs by parts in a thousand. A reading scored over the step ordering was therefore scored against a quantity the census was nearly holding fixed.

emergence · Survey spec

The ordering was not the actor

Cut an organ out of every rise of a band where the counted pair and the settled divergence are held and the two contact steps change places, and the family left standing does not change. Fifty-five wrecked cuts on two branches, and the ordering reverses underneath every one of them.

emergence · Ablation

The organ that moved furthest

A reading that works on nine of thirty rows needs a reference organ, and the obvious repair is to measure one rather than to choose it. Measured, the disturbance turns out to have no far edge at all, so there is no organ that moved furthest in any sense the reading can use — and the generalisation that does work needs no reference organ.

emergence · Ablation

The branch is what is left

Four accounts of why one band's cuts change what they keep and another's do not were written down before a third band was cut. Three of them are now wrong on a band each, and the survivor is the one with no mechanism behind it.

cylinder · Rung interior

A wall that was never measured

Three samplings of the starting angle give three orderings of the four falloff exponents' walls and a spread that does not shrink, while every error bar behind them halves. The reason is that a wall is a crossing of a nearly flat curve, and nobody had asked how well it is located.

emergence · Exponent

Six bands, one table

Every rung of this ladder that carries a handover now has a band grown on it and cut at every rise it holds, and four accounts of which bands change their answer are scored on all six at once. The survivor is right on every band that can test it, and the same table read one cell differently kills it.

cylinder · Rung interior

Named alongside it

The objects these essays reach for when they reach for this one.

Negative resultClaim testingHonest limitsParastichy pairControlMeasurementRungRiseAblationFalsifiabilityLattice offsetLattice

All concepts