Phyllotaxis
the spirals are counted, not admired
Concept

Transport — where it appears

The movement of fluid through a branching network, and the cost whose minimisation gives Murray's law. The derivation balances the energy of pumping against the cost of maintaining the tube, so the exponent it predicts is a consequence rather than a fitted number.

Named by 13 essays across 5 fields — each of them below, with the objects they name alongside it.

The uninformative sample does not say so — it says something else. Above: how many junctions of a given asymmetry it takes to distinguish an exponent of 3 from an exponent of 2, at 2% measurement error on each radius. An even fork needs one; a junction whose small daughter is a twentieth of the large one needs 2195. Below: 50 junctions from each end of the range, on a synthetic tree built at exactly 3. The even forks return 3.01; the twigs return 1.69, with an interval no wider — because 47% of them measure as a parent thinner than its own larger daughter, and dropping those keeps only the half where the noise ran the right way.

Which junctions say anything

Da Vinci's rule and Murray's law differ by 12% at an even fork and by a tenth of a per cent at a twig. So one even fork settles which is right, and two thousand twigs do not — a factor of two thousand across a tree, decided entirely by the shape of the junction and not by how carefully it is measured.

branching · Exponent The uninformative sample does not say so — it says something else. Above: how many junctions of a given asymmetry it takes to distinguish an exponent of 3 from an exponent of 2, at 2% measurement error on each radius. An even fork needs one; a junction whose small daughter is a twentieth of the large one needs 2195. Below: 50 junctions from each end of the range, on a synthetic tree built at exactly 3. The even forks return 3.01; the twigs return 1.69, with an interval no wider — because 47% of them measure as a parent thinner than its own larger daughter, and dropping those keeps only the half where the noise ran the right way.

A sample that is confidently wrong

Fifty lopsided junctions from a tree built at an exponent of exactly 3 return 1.7, with an interval that excludes 3 and excludes 2 as well. The sample carrying almost no information does not give a wide answer — it gives a narrow wrong one, and the cause is a selection nobody applies on purpose.

branching · Exponent A lattice with an error inherited from the two contact neighbours. The autocorrelation of 759 divergence angles from a kinematic lattice at a divergence of 137.8261° and a rise of 0.005, with 0.5° of scatter on each azimuth. There is no placement rule anywhere in it: node i is put at exactly i times the divergence and then displaced. The only thing that differs between this figure and the control is the structure of the displacement — here, an error inherited from the two contact neighbours at coupling 0.7. The largest comb mean is 0.514 against a sampling band of 0.073, and the readout returns 8/13.

Errors that pass between organs

An organ's neighbours are the ones eight and thirteen places back — that is what a parastichy pair is. So a disturbance transmitted by contact is correlated at exactly the two lags the readout examines, and it does not have to be told them. Driven into a lattice with no rule in it, it returns the counted pair on eight stems out of eight.

mechanism · Noise transport The two combs, in the proportions the rule gives them. The ratio of the second comb to the main one, for a kinematic lattice whose errors are inherited from its two contact neighbours, against how unevenly that inheritance is split. The horizontal line is where the placement rule's own stems sit, at 0.65. Weighted by distance — the coupling a d⁻³ interaction would give, which at this rise favours the 13-neighbour by 1.26 to one because the 13-hop is the shorter — the forgery sits at 1.46, well above the rule. It reaches the rule's value only at about 3 to one the other way, which is a factor of 4 against what distance supplies and in the opposite direction.

What a forgery has to know

A lattice with transported errors reproduces the comb and the pair, so one quantity is left: the two combs' relative strength. Weighted by distance the forgery puts more in the second comb than the first; the rule does the opposite. It matches only if the coupling is turned three to one towards the further neighbour, which no falloff supplies.

mechanism · Noise transport The ratio follows the disturbance, not the rule. The ratio of the second comb to the main comb on stems grown by the placement rule and jostled by seven different disturbances, all at 0.25° of displacement per organ and all on the same rule. Independent errors and errors with a memory return 0.76–0.81, which is the value this site measured for the rule. A periodicity at the smaller parastichy number takes it down to 0.45; errors inherited from the contact neighbours take it up to 1.09, most of the way to the 1.24 a transported disturbance gives with no rule in it at all. So the quantity separates arrangements by how their errors are related, not by whether anything computed the positions.

The ratio was never about the rule

The comb has already been retracted here as evidence that a plant computes its pattern, and one quantity was exempted from the retraction: the ratio of the two combs, which a placement rule and a transported disturbance divide differently. Drive seven disturbances through the same rule and the ratio spans 0.45 to 1.09. The exemption does not hold, and the angle sequence has nothing left.

mechanism · Noise transport Two combs, at a rise of 0.005. The autocorrelation of 760 divergence angles from one stem held at a rise of 0.005. The filled teeth are the lags at multiples of 8; the open teeth are the second comb, at the same spacing offset by 5. Reading the spacing off the first and the offset off the second gives the pair 8 and 13, which is what the position counter reports for the same stem — from angles alone, with no coordinate anywhere in the calculation.

A disturbance that is not passed on

The disturbance that forges every observable measured here does two things at once — it correlates an organ's error with its contact neighbours', and it hands that error on to be handed on again. Every result about it has been unable to say which half did the work. This is the control that takes the second half away and keeps the first.

mechanism · Noise colour The damage is the sharing; the forgery is the history. Three disturbances of the same size, measured four ways. The two left columns are stems grown by the placement rule and jostled at 0.25° per organ: a disturbance shared between the contact neighbours scatters the lattice by 0.71° against white noise's 0.57°, and one inherited from them — the same sharing, passed on again at every organ — by 0.97°. The two right columns are kinematic lattices with no rule in them at all, where the whole question is what a disturbance can manufacture. The inherited one returns the pair on 8 seeds of 8 with a main comb of 0.205 against a band of 0.073; the shared one, at the same coupling and the same scatter, returns it on 1 and makes a comb of 0.099, which is the band. So sharing an error with the organs you touch does the damage, and only passing it on and on forges the evidence.

The forgery needs a history

A disturbance passed between touching organs manufactures the comb, the second comb and the parastichy pair on an arrangement with no rule in it — which is why the comb stopped being evidence. Give the organs the same correlation with no accumulation in it and the forgery collapses: one seed in eight returns a pair, and the comb is the noise floor.

mechanism · Noise transport The wander is in the disturbance and not in what a plant lets you measure. Each disturbance measured twice, in the same statistic. On the left, the variance of the block means of the disturbance's own deviates, over blocks of 100, as a multiple of what independent draws would give; on the right, the same quantity for the divergence sequence those deviates produce, over blocks of 128. The left column is what this site measured when it proposed a slow wander as a second observable. The right column is what a botanist would have: a divergence is the difference of two organs' errors, and differencing is exactly the operation that removes power at low frequencies. The disturbance inherited between touching organs goes from ×49.1 — the largest here — to 0.83, which is what independent errors give. The one with a memory in time keeps most of its own.

A difference forgets a drift

This collection proposed a second observable and priced it as free: if a plant's errors are inherited between touching organs, the divergence sequence should carry a slow wander as well as a comb. The disturbance with the largest wander of any built here leaves none at all in the sequence, because a divergence is a difference and differencing is what removes a drift.

mechanism · Noise transport Through the rule, the drift survives and the inheritance still does not. How much of a divergence sequence's variance survives being averaged over blocks, on stems the rule grew. The vertical quantity is B² times the variance of the block means divided by the variance of the sequence, which is one at every block size for independent errors — the arithmetic is normalised for a differenced stream, since a divergence is the difference of two organs' errors. A line that climbs is a sequence with power at frequencies below one per block. The disturbances that remember the last error climb to 46 at a block of 64. The ones inherited between touching organs do not climb at all — 1.51 and 1.90 at the same block — although their own deviates carry ×— and ×— an independent stream's variance in exactly this statistic. What they do instead is dig a hole: at block sizes of 8 and 13, which are the offsets they couple at, the statistic falls to 0.06 and 0.12.

What the rule does to a drift

A placement rule was supposed to leave no slow wander in a divergence sequence, because its errors are corrections rather than inheritances. Driven by a disturbance that drifts, it leaves a larger one than a lattice with no rule in it at all — while cutting the per-organ scatter by more than half. The rule removes what is relative between neighbours, and a drift is not.

mechanism · Noise colour A periodicity reports a different partner every time. eight kinematic lattices, differing only in the seed of their disturbance, each read by the same instrument. The disturbance repeats every 8 organs at a weight of 0.9: it puts a strong comb at spacing 8 — 0.75 against a band of 0.07 — and the partner it names is 8/10, 8/12, 8/11 across the 8 stems and never 8/13, which is what the position counter finds in every one of them. There is no placement rule in any of these arrangements.

The control a survey would need

A comb no longer shows that a plant computes its pattern, so the survey this site has been specifying for a long time has to change. What it loses is its headline; what it gains is a measurement a botanist can actually make — six requirements, four of them already in the specification, and a quantity nobody has ever reported.

wrong · Control spec Which arrangements carry a comb, and what each one reports. The largest comb mean in five arrangements at a rise of 0.005, all read by the same instrument at the same length, with the sampling band of 0.073 marked. Only the first is a placement rule; the other four are kinematic lattices with no rule in them, differing from one another only in how their azimuth errors are structured. Independent errors and errors with a memory leave nothing to read. A repeating error puts up a comb and names a partner that is not the lattice's. Errors inherited from the contact neighbours reproduce both the comb and the pair.

The comb was never the rule

A control is only as strong as the alternative it builds, and the earlier work built one that varied the rule while holding the disturbance fixed at independence. Five rounds of the angle-sequence thread, with what each claimed and what still stands — and why the next evidence has to come from an intervention rather than from a longer stem.

cylinder · Noise transport The damage is the sharing; the forgery is the history. Three disturbances of the same size, measured four ways. The two left columns are stems grown by the placement rule and jostled at 0.25° per organ: a disturbance shared between the contact neighbours scatters the lattice by 0.71° against white noise's 0.57°, and one inherited from them — the same sharing, passed on again at every organ — by 0.97°. The two right columns are kinematic lattices with no rule in them at all, where the whole question is what a disturbance can manufacture. The inherited one returns the pair on 8 seeds of 8 with a main comb of 0.205 against a band of 0.073; the shared one, at the same coupling and the same scatter, returns it on 1 and makes a comb of 0.099, which is the band. So sharing an error with the organs you touch does the damage, and only passing it on and on forges the evidence.

What the sharing costs a lattice

A disturbance inherited from the contact neighbours destroys a stem's lattice at half the displacement independent noise needs, and it moves the comb ratio a fifth of the way to a forgery's. Take the inheritance out and keep the sharing, and the damage stays and most of the ratio shift goes — so the two effects have different causes.

cylinder · Noise transport What a lattice survives depends on the colour of the disturbance, sixfold. five stems for each of seven disturbances at each of six displacements, every stream normalised by its own measured spread so that a displacement of half a degree is half a degree in every row. A filled mark is a stem that still has a lattice — a divergence scatter under 2° — and an open one is a stem that does not. Independent errors survive to 0.5°; errors that remember the last one to 1.5°; errors inherited from the contact neighbours only to 0.25°. The number beside each row is the scatter a protractor would record where the lattice is standing, and it is the quantity that explains the table: what destroys a lattice is not how far an organ moves, but how far it moves relative to the organs it is placed against.

The disturbance that travels

If a lattice survives three times the displacement when the organs share it, then a disturbance passed between the organs that actually touch should be the gentlest of all — it is correlated at exactly the offsets the rule places against. It is the harshest. Half the displacement destroys what independent noise leaves standing, and the reason separates two things that had been one.

emergence · Noise colour

Named alongside it

The objects these essays reach for when they reach for this one.

MeasurementHonest limitsAutocorrelationNoiseDiscriminationEvidenceNull modelParastichy pairEnsembleThe placement ruleSummary statisticFalsifiability

All concepts