What a plant might be doing

Errors that pass between organs

An organ's neighbours are the ones eight and thirteen places back — that is what a parastichy pair is. So a disturbance transmitted by contact is correlated at exactly the two lags the readout examines, and it does not have to be told them. Driven into a lattice with no rule in it, it returns the counted pair on eight stems out of eight.

Worth reading first: A disturbance with a memory · What a mechanism would have to show · The sequence has a memory.

The previous phase’s control was a lattice with independent errors, and the two essays before this one have taken the two obvious ways of making them not independent. A memory manufactures nothing. A periodicity manufactures a comb and then names a partner that changes from stem to stem, which a second specimen catches.

This essay builds the third, and it is the one that was always going to be awkward, because it is not a contrivance. It is what happens if an organ’s error is passed on by the organs it touches.

A lattice with an error inherited from the two contact neighboursThe autocorrelation of 759 divergence angles from a kinematic lattice at a divergence of 137.8261° and a rise of 0.005, with 0.5° of scatter on each azimuth. There is no placement rule anywhere in it: node i is put at exactly i times the divergence and then displaced. The only thing that differs between this figure and the control is the structure of the displacement — here, an error inherited from the two contact neighbours at coupling 0.7. The largest comb mean is 0.514 against a sampling band of 0.073, and the readout returns 8/13.-0.50000.500125810131621242629lag, in internodescorrelation between a divergence and the one that many internodes later816245132129reads 8/13 · no rule in itmain 0.514 · band 0.073sampling bandkinematic lattice · 759 anglesgenerated from a stated rule, not drawn to look right
Fig. 1 A kinematic lattice at the same divergence and rise as every control here, with no placement rule anywhere in it. The only structure in the disturbance is that each organ’s azimuth error is inherited from the errors at the organs eight and thirteen places back, at a coupling of 0.7. Both combs are there, both clear the band, and the readout returns 8/13 — which is the pair the position counter finds in the arrangement, and the pair the placement rule’s own stems give.

Why this is not a contrivance

The choice of eight and thirteen looks like cheating, and the argument that it is not is the whole essay, so it is worth putting first.

A parastichy pair is not a fact about a plant’s arithmetic. It is a fact about its geometry: m and n are the index offsets whose two organs come out closest together on the surface. The organ eight places before this one, and the organ thirteen places before it, are the organs it is touching. That is what the spiral rows a botanist counts are — chains of organs in contact, each one m or n steps back in the order of production.

Which offsets give short hops, at a rise of 0.005The two lowest points are at 8 and 13, and those are the parastichy numbers. Offset 1 is high because a hop of one node is at least the rise, which is what makes a stem easier to count than a disc.0123102030index offsetmedian hop between node i and node i+m23300 nodes, 34 offsets triedshortest at 2 and 3
Fig. 2 The surface distance between an organ and the one k places before it, at this rise, ordered shortest first. The three shortest offsets are 13, 8 and 5; the pair the counter reports is 8 and 13. These are not numbers picked to make a forgery work — they are which organs are in contact, and any process that passes anything between touching organs passes it at these offsets.

So a disturbance transmitted by contact is correlated at m and at n automatically. It does not have to be told the pair; the pair is where the contact is. Any mechanism at all — a physical push between swelling primordia, a shared vascular strand, a locally depleted substrate, a mechanical stress field in the tunica — has this property. It is hard to think of a disturbance a plant could have that is transmitted at all and not transmitted at these offsets.

A cell's neighbours are its spiral familiesLeft: part of a 900-point golden, 137.508° head, with every contact between two cells drawn and coloured by the difference between the two nodes' placement indices. Right: the share each difference takes, across all 1903 contacts between interior cells. They are the parastichy numbers — 34, 55, 21, 89, 13, 8 — and the pair a person would count is 34 and 55. The six sides Euler forces are shared out among four of them, 5.72 edges per cell.a window on the head, 60% of its widthshare of all cell contactsby difference in placement index3431%5527%2117%8915%136%82%counted:34 and 55665 nodes · 1903 contacts · 5.72 per nodecoordinates in placement order, nothing else
Fig. 3 The same fact from the tissue side, where this site established it two phases ago: a cell’s neighbours in a head are the organs at the contact offsets, and the offsets are the parastichy numbers. The angle sequence and the cell packing turn out to be two views of one neighbour graph, which is the reason this essay’s disturbance is a natural object rather than a constructed one.

What it does to the readout

The disturbance is built the plainest way that has this property. The error at organ i is a fraction of the error at organ i − 8 plus the same fraction of the error at i − 13, plus a fresh draw, with the whole thing normalised so the recorded scatter is the same half degree as every other arrangement in this thread.

Nothing else changes. The nodes sit at exact multiples of the divergence before the displacement. No minimum is taken anywhere. No organ has any influence on where any other organ goes; the influence is only on how wrong it is.

Transported errors report the same pair every timeeight kinematic lattices, differing only in the seed of their disturbance, each read by the same instrument. The disturbance at each node is inherited from the nodes 8 and 13 places back, at a coupling of 0.7. Every stem returns 8/13, which is the pair the positions give and the pair the placement rule's own stems give. There is no placement rule in any of these arrangements.stemwhat the angles say18/13the lattice's own pair28/13the lattice's own pair38/13the lattice's own pair48/13the lattice's own pair58/13the lattice's own pair68/13the lattice's own pair78/13the lattice's own pair88/13the lattice's own pairthe positions say 8/13kinematic lattice · inherited errorgenerated from a stated rule, not drawn to look right
Fig. 4 Eight stems, differing only in the seed of the disturbance. Every one returns 8/13. Compare the same figure for the periodic forgery, where four refuse and the four that report name three different partners between them: this arrangement does not merely produce a comb, it produces the same reading every time, which is the property that was supposed to distinguish a measurement from an artefact.

The comparison that matters is against the control it replaces.

A lattice with independent errorsThe autocorrelation of 759 divergence angles from a kinematic lattice at a divergence of 137.8261° and a rise of 0.005, with 0.5° of scatter on each azimuth. There is no placement rule anywhere in it: node i is put at exactly i times the divergence and then displaced. The only thing that differs between this figure and the control is the structure of the displacement — here, independent errors — the previous phase's control at 0.5° of independent scatter. The largest comb mean is 0.029 against a sampling band of 0.073, and the readout refuses.-0.50000.500125810131621242629lag, in internodescorrelation between a divergence and the one that many internodes laterrefusedmain 0.029 · band 0.073sampling bandkinematic lattice · 759 anglesgenerated from a stated rule, not drawn to look right
Fig. 5 The previous phase’s control, unchanged: the same lattice with the same scatter, drawn independently. Nothing clears the band. The difference between this figure and the one at the top of the essay is not the arrangement, the divergence, the rise, the scatter, the length or the instrument. It is whether one organ’s error has anything to do with its neighbours’.

The claim that has to be withdrawn

The previous phase wrote:

The comb is the first quantity here that separates a process from a form, and it does so because it lives in the order the angles arrived in, which a finished pattern does not carry.

The first half of that is right and the second half is doing work it cannot do. A finished pattern does not carry the order the angles arrived in — but a disturbance on a finished pattern does, if it was transmitted between organs, because transmission happens in order. The arrangement in the figure at the top of this essay is a finished pattern with a history in its errors and no rule in its positions, and that possibility was not in the phase’s list.

So the claim as written is withdrawn. A comb in a real plant’s divergence sequence is not evidence that the plant computes its pattern.

It is worth being exact about what is left, because it is not nothing:

A comb is evidence that something was transmitted between contact neighbours. That is a real and non-trivial statement about a plant — it rules out a pattern whose organ positions are independent draws around an ideal lattice, which is the null model a botanist would otherwise be arguing against.

The placement rule is one process with that property, and not the only one. The rule transmits because each organ is placed against the ones near it. A mechanical push transmits because organs touch. The angle sequence does not distinguish them, and the next essay measures how nearly it comes to.

And the previous phase’s argument for why the comb exists never used the rule. Read it again: correlation travels between neighbours, so the lags carrying it are a·m + b·n for small a and b, and a one-step chain has b = 0 or ±1. Every word of that is about the neighbour graph. The placement rule appears nowhere in it. The explanation was right, and it was an explanation of something weaker than what it was attached to.

Every family but two is the sum of two othersFour heads and the contact families each actually has. An arc arrives at every family that is the sum of two smaller ones; the two with no arc arriving are the generators, and on every head they are the two smallest. whorled, 144°: 2, 3, 5 — golden, 137.508°: 8, 13, 21, 34, 55, 89 — Lucas, 99.502°: 11, 18, 29, 47, 76 — rational, 137.5°: 8, 13, 21, 34, 55, 89 — 137.0°: 8, 13, 21, 29, 50, 71, 92, 113. So once a pair is counted the rest is arithmetic, and a third counted family is a prediction rather than a second measurement.whorled, 144°from 2 and 3+2235golden, 137.508°from 8 and 13+8+13+21+3481321345589Lucas, 99.502°from 11 and 18+11+18+291118294776rational, 137.5°from 8 and 13+8+13+21+3481321345589137.0°from 8 and 13+8+8+21+21+21+218132129507192113contact families above 2% of all cell contactsfilled dots are the two that are not sums
Fig. 6 The arithmetic that explanation rests on, measured on real heads: every contact family above the two smallest is the sum of two others, so the whole set is generated by two numbers. It is a property of the lattice’s neighbour graph. Anything living on that graph inherits it — which is exactly why the second comb, the thing that made the two-number readout possible, is not the discriminator it was taken for.

What “form against process” turns out to mean

The distinction this thread has been trying to measure is usually put as form against mechanism: a photograph of a finished plant shows the form, and the question is whether anything in it constrains the process that made it. The previous phase’s answer was that the order the organs arrived in is not in the photograph and is in the angle sequence, so the angle sequence carries process where the photograph carries only form.

That answer needs a correction rather than a replacement, and the correction is narrow enough to state in a sentence. The angle sequence carries whatever was transmitted along the order of production, and a placement rule is not the only thing that can be.

The arrangement at the top of this essay is a strange object worth looking at directly. Its positions are a form: node i is at exactly i times the divergence, decided before any organ existed, with no reference to any other organ. Its errors are a process: each one was computed from two earlier ones, in order, and could not have been computed in any other order. So it is a form with a history bolted onto it, and the history is only in the mistakes.

That is not as artificial as it sounds. A plant whose organ positions were determined by something other than local interaction — a pre-patterned field, say, or a genetically specified sequence — would still have organs that touch, and whatever passes between touching organs would still pass in the order they were made. The angle sequence would still carry a comb. What the comb reports is the existence of transmission along the contact graph, and that is a much weaker statement than the existence of a rule that chooses positions.

It is also, on reflection, the statement the measurement was always making. The readout finds correlation at the contact offsets. Correlation at the contact offsets is what transmission along contacts produces. The step from there to the plant computes its pattern was an inference about which process does the transmitting, and nothing in the data picked one.

How much coupling a plant would need

The forgery works over a range and the range is worth pricing, because it is the range a survey would have to argue a plant is outside of.

The coupling is the fraction of a neighbour’s error an organ inherits. At 0.3 — each organ taking three tenths of each of its two contact neighbours’ errors — the readout refuses on every stem: the comb sits at 0.090 against a band of 0.073 and does not clear. At 0.4 it reports on five stems of eight, at 0.5 on all eight. So the threshold is between the two, and what it means physically is that an organ has to inherit something like four tenths of each contact neighbour’s displacement before the signature appears at all.

The transition is sharp in the way a threshold on a mean usually is. The comb grows roughly as the square of the coupling — 0.09, 0.14, 0.21, 0.32, 0.55 at couplings of 0.3 to 0.7 — while the band it has to clear does not move, so a factor of two in the coupling is a factor of four in the comb and the difference between refusing everything and reporting everything is a coupling change of one tenth.

Is that a lot? It is more than nothing and less than everything, which is an unsatisfying answer, and the honest form of it is that nobody knows. The quantity has never been measured on a plant, because until this essay there was no reason to want it. What can be said is that it is not an extreme assumption: organs in a meristem are packed at the density where they are touching, they grow while in contact, and a displacement of one is not obviously attenuated by more than half before it reaches the next.

So the forgery is not ruled out by implausibility, and a survey that found a comb could not appeal to implausibility either.

Where the forgery breaks down

It is not free, and the boundaries are worth having because they are what a survey would have to rule out.

Below a coupling of about 0.4 there is nothing. The inherited fraction is too small, the comb does not clear the band, and the readout refuses on every stem.

A lattice with an error inherited from the two contact neighboursThe autocorrelation of 759 divergence angles from a kinematic lattice at a divergence of 137.8261° and a rise of 0.005, with 0.5° of scatter on each azimuth. There is no placement rule anywhere in it: node i is put at exactly i times the divergence and then displaced. The only thing that differs between this figure and the control is the structure of the displacement — here, an error inherited from the two contact neighbours at coupling 0.5. The largest comb mean is 0.166 against a sampling band of 0.073, and the readout returns 8/13.-0.50000.500125810131621242629lag, in internodescorrelation between a divergence and the one that many internodes later816245132129reads 8/13 · no rule in itmain 0.166 · band 0.073sampling bandkinematic lattice · 759 anglesgenerated from a stated rule, not drawn to look right
Fig. 7 The same disturbance at a coupling of 0.5, which is the lower end of the window in which the forgery works. Both combs are there and both clear, at 0.17 and 0.23 against a clearance of 0.13 — weaker than the rule’s, and enough. Every one of the eight stems returns the pair.

Above about 0.8 the arrangement stops being a lattice. Inherited errors accumulate: each organ takes most of two previous errors and adds its own, so the variance grows along the stem until the recorded scatter is 102° and the points are spread over the whole circumference. That is the same incoherence the placement rule reaches at a disturbance of 0.4, and it is refused for the same reason — there is no pattern left to read.

So the window is a coupling between roughly 0.4 and 0.8, which is not a narrow target. A process that passes half of an organ’s error to its two contact neighbours is not an extreme assumption about a plant; it is close to what “organs push each other” would mean.

The upper edge is worth one more sentence, because it is a real difference between the forgery and the rule and it points at where a discriminator might eventually be found. The forgery’s errors accumulate: nothing pulls a displaced organ back, so the variance of the displacement grows along the stem and the arrangement drifts off its own lattice. The placement rule’s errors do not, because the rule is self-correcting — an organ placed to one side of its minimum leaves a gap that pulls the next one the other way, which is what this site measured as a lag-one correlation of −0.6 two phases ago.

That difference is visible in the long-run behaviour of the scatter and invisible in a window of a few hundred organs at a coupling in the working range, which is why it does not appear as a discriminator here. On a stem long enough for the drift to show, it would — and no plant is that long.

Which arrangements carry a comb, and what each one reportsThe largest comb mean in five arrangements at a rise of 0.005, all read by the same instrument at the same length, with the sampling band of 0.073 marked. Only the first is a placement rule; the other four are kinematic lattices with no rule in them, differing from one another only in how their azimuth errors are structured. Independent errors and errors with a memory leave nothing to read. A repeating error puts up a comb and names a partner that is not the lattice's. Errors inherited from the contact neighbours reproduce both the comb and the pair.three sampling bandsthe placement rule0.6428/13independent errors0.031refusedan error with a memory0.014refusedan error that repeats0.4338/10, 8/12errors passed between neighbours0.5538/13one rule, four kinematic latticesgenerated from a stated rule, not drawn to look right
Fig. 8 The five arrangements of this thread together. The first is the placement rule. The last is this essay’s, and the two are within a fifth of each other in comb strength on an arrangement that has no rule in it at all. The two in the middle are what the previous phase’s control tested and what the previous essay tested.

What this does not touch

Two things, and stating them keeps the retraction from becoming a larger claim than it is.

It does not say the placement rule is wrong. Nothing here is evidence against the Douady–Couder rule, which this site has tested from a dozen other directions and which reproduces the ladder, the transitions, the bifurcation and the round trip. It says one observable that was offered as evidence for the rule does not distinguish it from a rival — and a rival that reproduces one observable is not a rival that reproduces the model. This essay’s arrangement has no ladder in it, cannot change parastichy pair as the rise falls, and has to be handed the divergence angle it is built at. The placement rule computes all three.

And it does not say the comb is worthless. A quantity that rules out independent errors is worth measuring, and it was the site’s own standard that made the retraction necessary: the control was stated, the assumption behind the control was written into the phase plan as untested, and the next phase tested it. A result that survives a test it was designed to fail is worth more than one that was never given the chance, and this one did not survive.

Three disturbances, three places to get inThe rule reads its neighbours, builds a profile of the energy at every azimuth, takes the least of it, and records a position. field noise enters at the profile; jostle noise enters at the neighbours; placement noise enters at the record. Two of the three are upstream of the choice and can change which minimum is taken; the third is downstream and never can.upstream of the choicethe neighboursalready placedthe profileenergy by azimuththe choicethe least of itthe recordwhat a ruler readsfield noisejostle noiseplacement noiseone rule, three entry pointsthe order is the argument
Fig. 9 The three places a disturbance can enter the placement rule, from the phase that separated them. This essay adds a fourth possibility that is not on this chart at all — a disturbance that enters nowhere near the rule, because there is no rule — and it produces the same readout as the ones that do.
Placements that went to a different minimum, per thousandThe rule's own counterfactual, run beside it: where would this node have gone with the noise taken away and everything else left alone? Placement noise displaces the node after the argmin, so the answer is always "here" — 0.4°, 0.8° all give zero. A jostle and a field perturbation are upstream of the choice and change one or two placements in a thousand while the lattice is still intact.field 0.0052.10.70° of scatterfield 0.00750.01.00° of scatterfield 0.010.01.12° of scatterjostle 0.41.10.87° of scatterjostle 0.81.11.12° of scatterplacement 0.40.00.94° of scatterplacement 0.80.01.42° of scatter3 runs each · a basin change is half a local spacingplacement noise: zero by construction
Fig. 10 And the property the placement rule has that this essay’s arrangement does not: a rule chooses, and a disturbance can change which minimum it chooses. That is the difference between the two objects, it is real, and the whole of the next essay is about how nearly invisible it is in a list of angles.
Two stems at 0.75° of scatter, one angle at a timeThe divergence of each node, with the slow climb of the ladder removed. Both stems scatter by about 25.97° and a botanist would report them identically. The jostled one wanders in runs — its lag-one correlation is 0.70 — and the one with placement noise alternates about the mean at 0.21, because a displacement of one node enters two consecutive divergences with opposite signs.jostle noise — correlation 0.70placement noise — correlation 0.21243 nodes each, both at 25.97° of scattercorrelations 0.70 and 0.21
Fig. 11 The standing lesson of this thread, arrived at once more from a new direction: two arrangements with the same recorded scatter can differ in everything that matters, and a protractor cannot see the difference. What is new is that the second comb — the quantity introduced one phase ago to break exactly this kind of tie — does not see it either.
The two combs, in the proportions the rule gives themThe ratio of the second comb to the main one, for a kinematic lattice whose errors are inherited from its two contact neighbours, against how unevenly that inheritance is split. The horizontal line is where the placement rule's own stems sit, at 0.65. Weighted by distance — the coupling a d⁻³ interaction would give, which at this rise favours the 13-neighbour by 1.26 to one because the 13-hop is the shorter — the forgery sits at 1.46, well above the rule. It reaches the rule's value only at about 3 to one the other way, which is a factor of 4 against what distance supplies and in the opposite direction.0.4000.6000.80011.201.40-0.30100.1760.3010.4770.699how much more strongly the error is inherited from the 8-neighbour than from the 13-neighbourthe second comb's strength as a fraction of the main comb'sthe placement rule: 0.65equal combs1:21:11.5:12:13:15:1at 3:1 the ratio is 0.75kinematic lattice · 3 seeds a pointgenerated from a stated rule, not drawn to look right
Fig. 12 The quantity the next essay measures, which is what is left once this one has taken away the qualitative test: not whether there is a comb, but how the two combs divide the correlation between them.

What links here

Computed from the collection, not written here: the essays that point at this one.

Reads more easily once this is understood

Essays that name this one as worth reading first.

Shares its objects with

Essays that name at least two of the same things, and that neither author linked.

  • The comb was never the rule — both name autocorrelation, discrimination, evidence, honest limits, measurement, mechanism, null model, the placement rule, self correction, transport
  • A harmonic is a step taken twice — both name autocorrelation, divergence angle, lattice, measurement, nearest neighbour, parastichy pair, the placement rule, self correction
  • The control a survey would need — both name autocorrelation, discrimination, evidence, honest limits, measurement, null model, parastichy pair, transport
  • The second comb — both name autocorrelation, divergence angle, lattice, measurement, nearest neighbour, parastichy pair, the placement rule
  • The test a plant could settle — both name autocorrelation, discrimination, divergence angle, evidence, measurement, noise, self correction
  • What a quiet plant is worth — both name autocorrelation, discrimination, divergence angle, evidence, honest limits, measurement, noise

Named objects

A flat tag is an object no other essay names yet.

AutocorrelationDiscriminationDivergence angleEvidenceHonest limitsLatticeMeasurementMechanismNearest neighbourNoiseNull modelParastichy pairThe placement ruleSelf correctionTransport