What a plant might be doing

Four ways to count a neighbourhood

How deep does the placement rule look? Counting the organs that carry nine tenths of its profile gives 182 down to 3 as the falloff steepens. Counting the ones that carry half gives 33 down to 1. The weighted mean lag gives 68 down to 11. The four disagree by an order of magnitude about the size and agree exactly about the order.

Worth reading first: A disturbance with a memory · Fitting the exponent · How far a primordium reaches.

The rule places each organ where a sum is smallest — one term per organ already there, each falling off as a power of the distance. The exponent of that power is the only thing in the rule that says how far it looks, and it has been used as a knob: sweep it, and the neighbourhood the rule attends to changes from almost two hundred organs to almost none.

That sweep produced a refutation. A disturbance with a memory was supposed to pass through a rule whose neighbourhood was shallower than the memory and be corrected by one that was deeper, with the crossover tracking the depth. There was no crossover at any depth, and the deep rule passed more rather than less.

The wander climbs because its denominator falls. Three quantities across the same sweep of the rule's depth, each divided by its own value for the shallowest rule so that they share an axis. The wander rises by a factor of 3.7 as the neighbourhood goes from 3 organs to 182. The scatter between neighbouring divergences falls by 1.57, because that is the part of a disturbance a placement rule corrects and a deeper rule corrects it better. What is left — how many degrees of slow drift actually reach the divergences — changes by 1.20, from 1.52 to 1.82 degrees. The rule barely filters a drift at any depth.
Fig. 1 The result being followed up. Swept across a factor of sixty in the neighbourhood, the ratio the drift is undone by moves the opposite way from the prediction, smoothly and without a crossing.

A negative result that leans on a measured quantity deserves a second measurement of that quantity, which is what this essay is. How deep the rule looks was reported one way; there are three others, and they do not agree — though what they agree about instead turns out to be the more useful answer.

What the profile is

At the moment an organ is placed, the rule evaluates a sum over the organs already there. Each term is one over the distance to the power of the exponent, and the distance is measured across the surface of the stem rather than up it.

A stem gathers neighbours linearly; a growing disc barely gathers them at all. On a cylinder of circumference 1 with a rise of 0.005, the nodes within distance d number 2d/0.005 once d exceeds one turn — a fitted exponent of 1.011 and 400 per unit against the 400 the geometry fixes. In the disc model an element of age k sits at radius e^(0.4k), so each doubling of the distance adds the same two or three neighbours rather than twice as many.
Fig. 2 The distances the sum is over, on a settled stem. A handful of near neighbours and a long tail, which is the shape every question here is about.

A “depth” is a summary of that sum: some statement of how many organs are doing the work. The trouble is that the sum has no edge. Every organ ever placed contributes something, so any count of organs requires a decision about how much of the total is enough — and the decision is a free parameter that nobody has ever varied.

Four summaries

The first three fix a share and count organs. Rank the terms by size, add them up until the running total reaches the share, and report how many terms that took. The share used before was nine tenths. A half and ninety-nine hundredths are equally defensible.

The fourth uses no share at all. The weighted mean lag is the average distance back, in organs, with each organ weighted by the size of its own term. It is the centre of mass of the profile and it needs no threshold.

exponent half nine tenths ninety-nine hundredths weighted mean
1.5 33 182 284 68.2
2 12 120 263 45.4
3 3 30 149 20.8
4 2 8 54 13.5
6 1 3 9 11.1
Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by four different definitions. Counting the organs that carry half the profile gives 33, 12, 3, 2, 1. Counting the organs that carry nine tenths gives 182, 120, 30, 8, 3. Counting the organs that carry ninety-nine hundredths gives 284, 263, 149, 54, 9. Counting the organs that carry the weighted mean lag gives 68, 45, 21, 14, 11. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.
Fig. 3 The four, on one logarithmic axis. They differ by two orders of magnitude at a single exponent and none of them crosses another.

Why “how many organs” is a question with no answer in the rule

The rule contains no number of organs. It contains an exponent, and a loop bound that has been shown to change nothing.

That is worth separating, because the two are constantly confused. The loop bound is how far back the implementation actually sums; it is a parameter of the program. The neighbourhood is how far back the terms matter; it is a property of the exponent. Sweeping the first from one local spacing to six moves the divergence’s wander by a factor of 1.30, against a factor of 3.28 between random seeds at one setting — which is the shape a parameter has when it is not in the answer.

So the only knob that reaches the neighbourhood is the exponent — and what a band of exponents can be made to say is its own caution — while the neighbourhood is a summary of a sum with no edge. Any number of organs attached to it is a summary somebody chose, and the four here are four such choices.

They disagree about the size by a factor of ten

Read down the exponent-3 row: the rule’s neighbourhood is 3 organs, 30 organs, 149 organs or 21 organs, depending on which summary is asked. That is a range of fifty to one at a single setting of the rule, and every one of the four is a defensible answer to “how many organs is it looking at”.

Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by two different definitions. Counting the organs that carry half the profile gives 33, 12, 3, 2, 1. Counting the organs that carry nine tenths gives 182, 120, 30, 8, 3. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.
Fig. 4 Two of the four on their own, at the widest separation. Half the profile is carried by three organs at this exponent and nine tenths by thirty.

They also disagree about how much the neighbourhood changes across the sweep, which matters more for what the depth was being used for. Across exponents 1.5 to 6, the nine-tenths count moves by a factor of 60.7; the half count by 33; the ninety-nine count by 31.6; and the weighted mean by 6.1.

Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by two different definitions. Counting the organs that carry nine tenths gives 182, 120, 30, 8, 3. Counting the organs that carry the weighted mean lag gives 68, 45, 21, 14, 11. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.
Fig. 5 The widest and the narrowest. One says the sweep changes the neighbourhood sixtyfold and the other says sixfold, and both are computed from the same runs.

So a claim of the form “the rule’s neighbourhood spans a factor of sixty across this sweep” was carrying a chosen constant that nobody had varied, and varying it moves the factor to six.

No conversion factor exists between them

The four disagree about the size and about the range, and there is a third disagreement underneath both which decides how much the table can be used for.

If the four were four rescalings of one quantity — four rulers with different units — then the ratio between any two of them would be the same at every exponent, and a reader who preferred one could convert. Read the table across and they are not. The nine-tenths count divided by the half count runs 5.5, 10.0, 10.0, 4.0, 3.0 down the sweep. The weighted mean divided by the half count runs 2.1, 3.8, 6.9, 6.8, 11.1. Neither is remotely constant, and the second runs the opposite way from the first.

So there is no conversion. A neighbourhood of thirty organs by one summary is a neighbourhood of three by another at one exponent and of one by that same other at a different exponent, and the factor between them is itself a function of the thing being measured. That is the sharpest form of the essay’s caution: a depth quoted without its definition cannot be converted into a depth quoted with a different one, even approximately, so two results computed with different summaries are not comparable at all.

It also explains why the ordering survives while nothing else does. An ordering needs only that each summary be monotone in the exponent; it needs nothing about the ratios between them. Everything the four agree on is ordinal, and everything they disagree about is the part a number carries. That is a small thing to be able to say precisely, and it is what makes the negative result usable rather than merely reassuring.

Where each definition puts its emphasis

The four disagree in a structured way rather than randomly, and reading the structure is most of what makes the table useful.

The half count is a statement about the very top of the profile: at an exponent of 6 it is one organ, which says that a single term is more than half of everything. The ninety-nine hundredths count is a statement about the tail: at an exponent of 1.5 it is 284 organs, which is nearly the whole window the profile was computed over, and says that the tail there is heavy enough to matter out to the edge of what was measured.

Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by two different definitions. Counting the organs that carry half the profile gives 33, 12, 3, 2, 1. Counting the organs that carry ninety-nine hundredths gives 284, 263, 149, 54, 9. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.
Fig. 6 The two extremes of emphasis. One reports how concentrated the top is and the other how far the tail runs, and they are two different questions about one distribution.

The nine tenths count sits between them and inherits both sensitivities, which is why it moves furthest across the sweep: at a steep exponent it is reporting the top and at a shallow one it is reporting the tail, so it is measuring different things at the two ends.

The weighted mean is the least sensitive because it never sorts. Every organ contributes its own lag weighted by its own term, so a heavy top pulls it down and a heavy tail pulls it up, and at these profiles the two partly cancel.

And they agree about the order, exactly

Every one of the four falls as the exponent rises. Not approximately, not with a crossing somewhere in the middle: at every adjacent pair of exponents, each of the four definitions puts the same rule deeper than the other.

Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by four different definitions. Counting the organs that carry half the profile gives 33, 12, 3, 2, 1. Counting the organs that carry nine tenths gives 182, 120, 30, 8, 3. Counting the organs that carry ninety-nine hundredths gives 284, 263, 149, 54, 9. Counting the organs that carry the weighted mean lag gives 68, 45, 21, 14, 11. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.
Fig. 7 The four lines, and the fact that none of them crosses another. That is the whole content of this section.

That is the finding, and it is a negative one. No redefinition of the depth can change the sign of a result about the depth. The earlier sweep found the deep rule passing more drift than the shallow one and no crossover between them; if “deep” and “shallow” mean the same ordering under every available definition, then that result cannot be an artefact of how the neighbourhood was counted.

That closes off one repair and leaves the result standing. It does not explain it, and it makes the situation stranger rather than less strange: a quantity that varies by a factor of sixty by one measure and six by another is producing an outcome whose ordering does not depend on which.

The weighted mean is the one worth keeping

Of the four, the weighted mean is the one this collection should report from here on — with a qualification the section after next has to make — and there are two reasons for it that are not “it gives a different answer”.

The first is that it has no chosen constant. The other three all require somebody to say how much of the profile counts as the neighbourhood, and there is no principled answer — nine tenths and ninety-nine hundredths are equally defensible and give 30 organs and 149 at the same exponent. The weighted mean asks a different question, “where is the centre of the profile”, and the answer needs no threshold.

Four ways to count the rule's neighbourhood, and one ordering. How many organs the placement rule is looking at, as its falloff exponent is swept from 1.5 to 6, by two different definitions. Counting the organs that carry ninety-nine hundredths gives 284, 263, 149, 54, 9. Counting the organs that carry the weighted mean lag gives 68, 45, 21, 14, 11. They disagree about the size of the neighbourhood by a factor of 10 — the widest moves by 61 times across the sweep and the narrowest by 6.1 — and every one of them falls as the exponent rises. So no choice among them changes which rule is the deeper, and no redefinition can turn a result about the depth around.
Fig. 8 The one with no chosen constant beside the one whose constant is largest. They disagree by a factor of seven at the deepest exponent and agree about the order.

The second is that a count of organs is a count of the largest terms, wherever they are, and it therefore mixes two different facts: how heavy the top of the profile is, and how quickly the tail dies away. The weighted mean mixes them too, but it weights each organ by its own contribution rather than sorting and counting, so a handful of very large terms at short lags cannot be counted as “three organs” while a hundred small ones are ignored.

Neither reason is a claim that the weighted mean is the true depth. There is no true depth; there is a sum with no edge and four ways of summarising it.

None of that changes the ordering, which is the finding. It changes what a number attached to the neighbourhood is worth, and the number the earlier work carried was the one that moves furthest.

The weighted mean has a floor, and it is the tail

The recommendation above needs a qualification, and it is visible in one cell of the table.

At an exponent of 6, one organ carries half the profile and nine carry ninety-nine hundredths. The weighted mean at that exponent is 11.1. So even where a single term is more than half of everything, the centre of mass of the profile sits eleven organs back — further back than the whole of the ninety-nine-hundredths count.

The arithmetic of that is worth doing because it says where the eleven comes from. Ninety-nine hundredths of the weight sits at short lags and contributes something of order eight or nine to the mean. The remaining hundredth is spread over the hundreds of organs the profile was computed across, at lags averaging in the low hundreds, so it contributes a further two or three. A quarter of the weighted mean at the steepest exponent is supplied by one per cent of the profile.

Which reverses the intuition the recommendation rests on. The weighted mean was preferred because it has no chosen constant, and that is true; but having no constant does not make it neutral about the tail. It is in fact the most tail-sensitive of the four, because a vanishing weight at a very long lag still moves a mean while it cannot move a count of organs at all.

Two consequences follow. The weighted mean’s factor of 6.1 across the sweep is partly a floor effect — the quantity cannot fall much below the tail’s own contribution however steep the rule is made, so the compression at the steep end is arithmetic rather than a statement that the neighbourhood has stopped shrinking. And the weighted mean inherits the window the profile was computed over, which is a chosen constant after all: widen the window and the tail’s lags grow, and the mean grows with them, where every count of organs would be unchanged.

So the honest recommendation is narrower than the one above. The weighted mean is the summary to report alongside a count, because it is the one that answers a different question rather than the same question with a different dial — and it should be reported with the window it was computed over attached, for the same reason a count is reported with its share.

Why a second definition was worth the trouble

Because the alternative was to leave a number in a negative result that nobody had tested.

The nine-tenths share was chosen when the depth was first computed, and the note attached to it said the claim did not turn on it — that at eight tenths the exponents separate by thirty-eight and at ninety-five hundredths by fifty. That is a check on the robustness of the number and it is not the same as a check on the choice of statistic. Both eight tenths and ninety-five hundredths are the same summary with the dial moved. The weighted mean is a different summary, and it is the one that disagrees.

The trouble was also cheap. The profile is computed on an undisturbed stem, once per exponent, and every summary of it comes out of the same array of terms. All four definitions are four lines of arithmetic over one measurement, which is the usual state of affairs when a chosen constant has gone unexamined for a while.

And there is one more definition worth mentioning and not using: the deepest organ in the top share, rather than how many organs are in it. Those are different numbers, because the top share is assembled by size and not by lag — the thirty organs carrying nine tenths of the profile at an exponent of 3 include lags well past thirty. That distinction is recorded in the machinery and it is not a fifth definition; it is a reminder that “thirty organs” already means “thirty terms” and never meant “the last thirty”.

What the earlier sweep was entitled to say

With four definitions in hand it is possible to be precise about which of the earlier statements survive and which were carrying the chosen constant.

“The falloff is the neighbourhood, and the loop bound is not.” Survives, and is strengthened. Every definition moves with the exponent and none moves with the loop bound.

“The neighbourhood spans a factor of sixty-one across the sweep.” Does not survive as stated. It spans sixty-one by one summary, thirty-three by another, thirty-two by a third and six by the fourth, and the figure quoted was the largest of the four.

“The deep rule passes more drift than the shallow one.” Survives, because “deep” and “shallow” are the same ordering under all four.

“There is no crossover at any depth.” Survives this essay and does not survive the next two, for a reason that has nothing to do with the definition of depth.

That is a useful sorting to have. Two of the four claims are strengthened by having a second measurement, one is qualified, and the one that eventually falls falls for an unrelated reason — which is roughly the distribution a careful re-measurement of an old quantity ought to produce.

The thing the table is quietly saying

Look at the exponent-6 row. Half the profile is carried by one organ; nine tenths by three; ninety-nine hundredths by nine. Now look at exponent 1.5: half by thirty-three, nine tenths by a hundred and eighty-two.

The shape of the profile is changing enormously and the ordering is not. Which suggests that whatever is at the top of the profile might be the same at both — and if it is, then counting the neighbourhood in organs was never going to distinguish the two rules in the way the sweep needed.

That is checkable in one line, and the answer is the subject of the next essay.

What links here

Computed from the collection, not written here: the essays that point at this one.

Shares its objects with

Essays that name at least two of the same things, and that neither author linked.

  • What the ratio was hiding — both name falsifiability, honest limits, measurement, negative result, neighbourhood depth, noise, the placement rule, summary statistic
  • What the rule does to a drift — both name honest limits, measurement, negative result, neighbourhood, noise, the placement rule, summary statistic, tolerance
  • Not the shorter of the two — both name falsifiability, honest limits, measurement, negative result, neighbourhood, the placement rule, tolerance
  • One offset, two answers — both name falsifiability, honest limits, measurement, negative result, the placement rule, underdetermination
  • One rise per rung is a sample — both name falsifiability, honest limits, measurement, negative result, summary statistic, underdetermination
  • One rung, two answers — both name falsifiability, honest limits, measurement, negative result, the placement rule, underdetermination

Named objects

A flat tag is an object no other essay names yet.

Exponent fittingFalsifiabilityHonest limitsThe range of the interactionThe local exponentMeasureMeasurementNegative resultNeighbourhoodNeighbourhood depthNoiseThe placement ruleSummary statisticToleranceUnderdetermination