Concept

Ensemble — where it appears

A set of runs differing only in their random seed, over which a statistic is averaged. A single run of a rule with noise in it can give any answer within its own spread, so every number here that depends on a seed is reported over several.

Named by 41 essays across 5 fields — each of them below, with the objects they name alongside it.

Three disturbances, three places to get in. The rule reads its neighbours, builds a profile of the energy at every azimuth, takes the least of it, and records a position. field noise enters at the profile; jostle noise enters at the neighbours; placement noise enters at the record. Two of the three are upstream of the choice and can change which minimum is taken; the third is downstream and never can.

The noise that arrives through the neighbours

The two kinds of noise this site had were idealisations that bracket the rule's choice. The realistic disturbance is neither: a primordium is placed exactly, and then the organ grows, so by the time the next one forms its neighbours have moved. That is a third kind, and it is invisible in every measurement a plant offers.

mechanism · Noise entry
The angles against the positions, rise by rise. three rises, five seeded stems each. A filled mark is a run whose angle readout returned the pair the position counter finds in the same stem; an open mark is a refusal. At 0.032 the counter says 3/5 and the angles agree on 0 of 5, refusing 5. At 0.013 the counter says 5/8 and the angles agree on 5 of 5. At 0.005 the counter says 8/13 and the angles agree on 5 of 5. The two instruments share no code path: one is given a list of angles, the other a list of coordinates.

A counter that sees no positions

This site has counted spirals two ways, and both were handed coordinates. A third counter is handed a list of angles and nothing else. It returns one number instead of two, it refuses more often, and where it refuses it would have been wrong every time.

lattices · Counting
A lattice with independent errors. The autocorrelation of 759 divergence angles from a kinematic lattice at a divergence of 137.8261° and a rise of 0.005, with 0.5° of scatter on each azimuth. There is no placement rule anywhere in it: node i is put at exactly i times the divergence and then displaced. The only thing that differs between this figure and the control is the structure of the displacement — here, independent errors — that earlier work's control at 0.5° of independent scatter. The largest comb mean is 0.029 against a sampling band of 0.073, and the readout refuses.

A disturbance with a memory

That earlier work's control assumed that a plant's errors are independent from organ to organ, and nobody had tested it. Give the errors a memory — each one a fraction of the last, up to a coefficient of 0.97 — and the comb does not appear. The obvious threat to the result turns out to be empty, and the algebra says why before the measurement does.

mechanism · Noise colour
A lattice with an error that repeats every 8 organs. The autocorrelation of 759 divergence angles from a kinematic lattice at a divergence of 137.8261° and a rise of 0.005, with 0.5° of scatter on each azimuth. There is no placement rule anywhere in it: node i is put at exactly i times the divergence and then displaced. The only thing that differs between this figure and the control is the structure of the displacement — here, an error that repeats every 8 organs at period 8, weight 0.7. The largest comb mean is 0.592 against a sampling band of 0.073, and the readout returns 8/10.

A periodicity is not a lattice

Give a lattice's errors a period of eight and a comb appears at spacing eight, on an arrangement with no rule in it. But the partner it names is 10, then 12, then 11, then nothing — an accident of the disturbance rather than a measurement of the pattern. The forgery is caught by reading a second stem, and by nothing else.

lattices · Noise colour
What becomes of a seeded branch at 65 nodes per rung. Each bar is 10 runs at one amplitude, divided by what the blind counter found at the top of the stem. With no noise this rate ends on the Lucas branch. Placement noise displaces the node after the rule has chosen; field noise perturbs the energy the rule chooses over. Across 160 runs, 1 reached the Fibonacci branch with the lattice intact.

Noise is not a slow rate

A stem seeded on the Lucas branch keeps it below ninety nodes per rung and abandons it above — which invites the objection that a real apex's fluctuations would knock it off regardless. Measured across a hundred and sixty runs of two independent kinds of noise, one escapes, at the amplitude where the pattern is already coming apart.

emergence · Noise amplitude
The ratio follows the disturbance, not the rule. The ratio of the second comb to the main comb on stems grown by the placement rule and jostled by seven different disturbances, all at 0.25° of displacement per organ and all on the same rule. Independent errors and errors with a memory return 0.76–0.81, which is the value this site measured for the rule. A periodicity at the smaller parastichy number takes it down to 0.45; errors inherited from the contact neighbours take it up to 1.09, most of the way to the 1.24 a transported disturbance gives with no rule in it at all. So the quantity separates arrangements by how their errors are related, not by whether anything computed the positions.

The ratio was never about the rule

The comb has already been retracted here as evidence that a plant computes its pattern, and one quantity was exempted from the retraction: the ratio of the two combs, which a placement rule and a transported disturbance divide differently. Drive seven disturbances through the same rule and the ratio spans 0.45 to 1.09. The exemption does not hold, and the angle sequence has nothing left.

mechanism · Noise transport
A lattice survives about 1.8° of scatter, whichever way the noise arrives. The largest divergence scatter at which a run is still a lattice, from each kind of noise at the largest amplitude that leaves one. The two routes share no code below the placement rule: one displaces the node after the choice, the other perturbs the energy the choice is made over. They agree to 0.33°.

Two degrees of scatter

A lattice tolerates about two degrees of wander in its divergence angle, and two kinds of noise sharing no code agree on the number to within a third of a degree. It is not a constant: carried finer, the same stem survives 0.8°, and the tolerance tracks the band of angles that produce its pair at all.

emergence · Scatter tolerance
What the model settles on, against how fast the meristem grows. A broad golden branch, a transition, and then the two-whorl regime at exactly half a turn. 16 of 40 converged settings land within 4° of the golden angle; 17 land more than 20° away.

Two-ranked, by two different routes

The rule produces a two-ranked stem at a coarse rise, where 180° is the only thing available, and that has been in the bifurcation diagram since the beginning. It also produces one at a fine rise, at a rise whose own answer is the golden angle, if a single organ is removed. The diagram cannot show the second, and the reason it cannot is how it is drawn.

mechanism · Attractor
The measurement is limited by the protractor, not by the plant. The peak falls as the reading error grows, and it falls by an arithmetic factor with nothing fitted: a position error enters two consecutive divergences with opposite signs, adding variance at every lag while the pattern's signal sits at one. At a quarter of a degree the readout is right on all 5 runs; at half a degree on 2; at a degree on 1. Below the dashed floor the peak is the largest of thirty noisy numbers rather than a measurement.

What the protractor has to be

The readout that names the parastichy number costs sixty internodes, which is cheap. It also needs every organ's position measured to better than a quarter of a degree, which is not — and the requirement follows from arithmetic rather than from care, so no amount of averaging relaxes it.

wrong · Sequence
Two combs, at a rise of 0.005. The autocorrelation of 760 divergence angles from one stem held at a rise of 0.005. The filled teeth are the lags at multiples of 8; the open teeth are the second comb, at the same spacing offset by 5. Reading the spacing off the first and the offset off the second gives the pair 8 and 13, which is what the position counter reports for the same stem — from angles alone, with no coordinate anywhere in the calculation.

A disturbance that is not passed on

The disturbance that forges every observable measured here does two things at once — it correlates an organ's error with its contact neighbours', and it hands that error on to be handed on again. Every result about it has been unable to say which half did the work. This is the control that takes the second half away and keeps the first.

mechanism · Noise colour
The memory of a divergence sequence, at 0.75° of scatter. With no noise at all the lag-one correlation is 0.54: the rule corrects itself, so a lattice arrives with a memory in it. Matched at the same recorded scatter, placement noise leaves -0.10, jostle noise leaves 0.66, field noise leaves 0.47. The band is ±0.13, which is what an uncorrelated sequence of this length gives.

The sequence has a memory

Every measurement this collection has made of a stem's divergence angles throws the order away. A spread is invariant to shuffling. Put the angles back in order and there is a large correlation between one and the next — 0.54 with no noise at all — which is the rule correcting itself, and which nothing had looked at.

cylinder · Sequence
A rule too long-ranged makes no pattern; every shorter one makes the same pattern. Each dot is 4 runs from a coarse start at one exponent, separated by 0.2° of placement noise. Below p ≈ 1.1 the divergence scatters by tens of degrees, which is what an arbitrary sequence gives. From p = 1.25 to p = 8 — a sixfold range — every run ends on 8/13 with the scatter between 0.75° and 1.06°.

The exponent that barely matters

An unchecked claim, repeated since the first essays, held that the repulsion's falloff exponent hardly changes the answer. It could not be tested, because the function that would have taken it never passed one down. Tested at last, it is true on a disc — by three and a half degrees across a sixteenfold range — and on a stem it decides whether there is a pattern at all.

emergence · Falloff exponent
The damage is the sharing; the forgery is the history. Three disturbances of the same size, measured four ways. The two left columns are stems grown by the placement rule and jostled at 0.25° per organ: a disturbance shared between the contact neighbours scatters the lattice by 0.71° against white noise's 0.57°, and one inherited from them — the same sharing, passed on again at every organ — by 0.97°. The two right columns are kinematic lattices with no rule in them at all, where the whole question is what a disturbance can manufacture. The inherited one returns the pair on 8 seeds of 8 with a main comb of 0.205 against a band of 0.073; the shared one, at the same coupling and the same scatter, returns it on 1 and makes a comb of 0.099, which is the band. So sharing an error with the organs you touch does the damage, and only passing it on and on forges the evidence.

The forgery needs a history

A disturbance passed between touching organs manufactures the comb, the second comb and the parastichy pair on an arrangement with no rule in it — which is why the comb stopped being evidence. Give the organs the same correlation with no accumulation in it and the forgery collapses: one seed in eight returns a pair, and the comb is the noise floor.

mechanism · Noise transport
What the sequence sees that the scatter cannot. Each point is an ensemble at one amplitude, placed at the scatter it produces. A stem at three quarters of a degree of scatter has a lag-one correlation near zero if its noise arrived after the primordium was placed, and near 0.7 if it arrived before — and no measurement of the scatter can tell those apart. The separation closes above about a degree, because what the other two kinds preserve is the correlation of a lattice.

What one angle says about the next

A tenth of a degree of placement noise moves a stem's divergence scatter from 0.50° to 0.62°, which nobody would report. It takes the correlation between consecutive angles from 0.54 to below zero. The other two kinds of noise, at scatters where no measurement can separate them, leave it at 0.6.

cylinder · Sequence
What the pair costs, at a rise of 0.005. Five seeded stems at each length, read at four protractor errors. With no reading error the pair needs 250 internodes — against the sixty the single parastichy number costs. At 0.25° per organ it needs 250; At 0.5° per organ it needs 400; At 0.75° per organ it needs 1100. The pattern's own scatter here is 0.70°, so the last of those is a reading error larger than the signal being read.

What the pair costs

The single parastichy number cost sixty internodes. The pair costs two hundred and fifty, and a protractor error of three quarters of a degree takes it to eleven hundred. The arithmetic that predicts the second of those is right about the shape and wrong about the scale by a consistent factor, which is recorded rather than fitted away.

wrong · Survey spec
The wander is in the disturbance and not in what a plant lets you measure. Each disturbance measured twice, in the same statistic. On the left, the variance of the block means of the disturbance's own deviates, over blocks of 100, as a multiple of what independent draws would give; on the right, the same quantity for the divergence sequence those deviates produce, over blocks of 128. The left column is what this site measured when it proposed a slow wander as a second observable. The right column is what a botanist would have: a divergence is the difference of two organs' errors, and differencing is exactly the operation that removes power at low frequencies. The disturbance inherited between touching organs goes from ×49.1 — the largest here — to 0.83, which is what independent errors give. The one with a memory in time keeps most of its own.

A difference forgets a drift

This collection proposed a second observable and priced it as free: if a plant's errors are inherited between touching organs, the divergence sequence should carry a slow wander as well as a comb. The disturbance with the largest wander of any built here leaves none at all in the sequence, because a divergence is a difference and differencing is what removes a drift.

mechanism · Noise transport
The order of the angles carries the count. Three stems, each held at a fixed rise so the pattern sits on one rung of the ladder. At a rise of 0.032 the positions count 3 and 5 spirals and the angles peak at 3; At a rise of 0.013 the positions count 5 and 8 spirals and the angles peak at 5; At a rise of 0.005 the positions count 8 and 13 spirals and the angles peak at 8. Each panel marks the peak and its multiples; the pale strip is what an uncorrelated sequence of this length gives.

The order carries the count

Take the divergence angles off a stem, throw away every coordinate, and autocorrelate what is left. The result is periodic at the smaller parastichy number — peaks at it and at every multiple of it. A list of angles, with no picture and no position in it, carries the spiral count.

cylinder · Sequence
Through the rule, the drift survives and the inheritance still does not. How much of a divergence sequence's variance survives being averaged over blocks, on stems the rule grew. The vertical quantity is B² times the variance of the block means divided by the variance of the sequence, which is one at every block size for independent errors — the arithmetic is normalised for a differenced stream, since a divergence is the difference of two organs' errors. A line that climbs is a sequence with power at frequencies below one per block. The disturbances that remember the last error climb to 46 at a block of 64. The ones inherited between touching organs do not climb at all — 1.51 and 1.90 at the same block — although their own deviates carry ×— and ×— an independent stream's variance in exactly this statistic. What they do instead is dig a hole: at block sizes of 8 and 13, which are the offsets they couple at, the statistic falls to 0.06 and 0.12.

What the rule does to a drift

A placement rule was supposed to leave no slow wander in a divergence sequence, because its errors are corrections rather than inheritances. Driven by a disturbance that drifts, it leaves a larger one than a lattice with no rule in it at all — while cutting the per-organ scatter by more than half. The rule removes what is relative between neighbours, and a drift is not.

mechanism · Noise colour
The memory belongs to the rise, not to the lattice. The lag-one correlation of a noiseless rising stem, against how fast it climbs the ladder. Below about sixty nodes per rung it is negative; above it, 0.54, 0.74, 0.58, 0.58, 0.55 — flat across a fivefold change in rate. The horizontal line is the same rule with the rise held FIXED, where the correlation is -0.68. So the +0.74 the earlier work called the sequence's own memory is the pattern chasing an equilibrium that is moving under it.

The memory was the rise

The earlier work measured a lag-one correlation of 0.54 in a noiseless divergence sequence and called it the sequence's own memory. Hold the rise fixed and there is no sequence at all — every angle identical — and under a disturbance the correlation is negative. The 0.54 belongs to the pattern chasing an equilibrium that is moving under it.

cylinder · Sequence
Both ends of the window are silent, and a ruler tells them apart. The scatter recorded on stems at 400 nodes per rung, against the disturbance that produced it, with the stems that returned no reading at all marked as open. Silence at the quiet end comes with a scatter of 0.38 and 0.44°, which any botanist would call an orderly plant; silence at the disturbed end comes with 56°, which nobody would call a pattern. The two refusals look identical in the instrument's output and are three orders of magnitude apart in a quantity measured with a protractor.

A refusal with a reason

Three note left with the work running have recorded that a refusal has four causes and the sequence separates none of them. With a second window and a protractor, three are separated: silence at 0.38° of scatter is a quiet plant, silence at 56° is a disorderly one, and agreement certifies the rate. The fourth survives, and so does a worse discovery — agreement is not correctness.

wrong · Two windows
Two shapes, two ranges, one contrast. The exponential's lattice ends at 3.63 spacings and the gaussian's at 2.25 — ranges 47% apart — and at those two ranges the contrast is 5.74 and 6.09, 6% apart. The band is what the exponent route leaves: 3.98 at p = 1, where the uncut rule makes nothing, and 7.63 at p = 1.25, where it makes a lattice.

Two shapes, one threshold

Read in the same unit, an exponential falloff and a gaussian one disagree about where the lattice ends by half. The quantity they agree on turns out to be one the earlier work measured for an unrelated reason — and it agrees with a bracket left by a sweep of a completely different parameter.

emergence · Falloff exponent
Which lattices survive a fifth of a degree of noise. The share of runs that still have a lattice. The prediction was that a cut-off at this range would be as fragile as the truncation it replaces; it is not. Stating the neighbourhood as a function of distance did not merely make the old result honest — 100% of runs survive against 33%, at a scatter an inverse-cube rule cannot be told from.

The fragility belonged to the window

A pattern that exists only because the rule cannot see far was expected to be held together by that cut, and to fall over when nudged. It does — while the cut is a loop bound. Written down as a falloff at the same range, the same rule keeps every run under the same nudge, at a scatter an inverse-cube rule cannot be told from.

emergence · Noise amplitude
Both statistics, on the same stems, at a rise of 0.005. Five seeded stems at each disturbance, held at a fixed rise. Bars are how many returned the pair the position counter finds; open portions are refusals. The pair comes out from 0.1 to 0.25, and across that whole range the lag-one correlation of the same sequences is -0.33, -0.58, -0.59 — decisive, negative and flat. There is no trade between the two: one stem supplies both. Below the window the sequence has locked onto the sampling grid and is a cycle rather than a sample; above it there is no lattice left, at 116° of scatter.

Two readings from one stem

Three note left with the work in a row have recorded that the two statistics of a divergence sequence want opposite plants — one quiet, one disturbed. Measured on the same stems they do not. The conflict was in the interpretation of a sign, and the window in which both are readable is wide.

cylinder · Sequence
A sixfold neighbourhood, and nothing to dilute. The prediction was that a rule with fewer neighbours would convert a jostle into divergence scatter more efficiently. Across a sixfold widening the ratio sits between 0.97 and 1.00, and the one point that differs is the narrowest, at 0.82 — smaller, where the prediction wanted larger. The row underneath is why: past four spacings the rule builds the identical lattice, internode for internode, so there is no neighbourhood left to widen.

The neighbourhood was already settled

The earlier work explained a small difference between two kinds of noise by saying a jostle is diluted among some thirty neighbours. Sweep the neighbourhood sixfold and the difference does not move — because past four spacings the rule builds the identical lattice, internode for internode. There was nothing to dilute.

mechanism · Noise entry

Which minimum was chosen

The rule takes an argmin, so there are two completely different things noise can do to it: move the answer, or move the question. One of them can change what is chosen and the other cannot, ever — and the difference is exactly zero against one or two placements in a thousand, at amplitudes where every other measurement says the two are identical.

emergence · Noise entry

The boundary belongs to the pattern

Three kinds of noise, in three incommensurable units, destroy a lattice at the same place — about a degree and a half of divergence scatter. The earlier work measured that of two kinds and called it a scale rather than a constant. With a third it looks less like a coincidence and more like a property of what a lattice is.

emergence · Scatter tolerance

The rung was not the instrument

The earlier work said the pair readout has a ceiling one rung above where it works, that this is arithmetic rather than statistics, and that no amount of stem fixes it. The arithmetic is right and gives a band of lag windows that is never empty; what was actually stopping the reading was an eight-node seed and a grid of 384 azimuths.

cylinder · Instrument ceiling

A shoot too fast to remember

Sweep the rate at which a stem climbs the ladder and the correlation between one divergence and the next changes sign — negative below about fifty-five nodes per rung, positive above it, with the flip inside one step of the grid. The instrument the earlier work proposed is unavailable on a fast shoot, and nothing said so.

emergence · Rising

The ratio was the floor of a curve

One number was left standing between a placement rule and a transported disturbance, measured at one rise, with the explanation that the geometry there happens to favour the larger parastichy number. Swept across two rungs the number is a U — a floor of about 0.79 two thirds of the way up a rung, climbing past 2.8 as a transition approaches — and the geometry is flat exactly where the curve is steepest.

cylinder · Noise transport

The corner that does not move

Read as degrees of drift getting through rather than as a ratio, and compared seed by seed, the deep and shallow rules change hands. The share that goes to the deeper rule climbs from twenty-three per cent under white noise to ninety-four at a correlation length of a hundred organs — and the crossing sits at two or three organs whether the two rules differ by a factor of four or sixty-one.

mechanism · Noise colour

The grid was in the number

The rule places each organ at the least of a profile sampled at a fixed number of azimuths, and every flat run in these essays samples 384 of them — a step of 0.94°, against a disturbance of a quarter of a degree. The quantisation is the larger of the two, it is white, and it moves the discriminator from 0.79 to 0.62. The convergence study this collection had asked for and never done, in the place it turned out to matter.

cylinder · Instrument ceiling

Two windows on one stem

A pair read off a climbing shoot can only be read through a window, and a window can straddle a transition. Read a second window half a length lower and the outcomes fall into four kinds — and agreement between them never happens on a shoot whose rung is shorter than the window, which turns the most awkward of the four refusal causes into something a reading can certify.

emergence · Two windows

What the sharing costs a lattice

A disturbance inherited from the contact neighbours destroys a stem's lattice at half the displacement independent noise needs, and it moves the comb ratio a fifth of the way to a forgery's. Take the inheritance out and keep the sharing, and the damage stays and most of the ratio shift goes — so the two effects have different causes.

cylinder · Noise transport

What a sample grid decides

The rule takes its minimum over 384 sampled azimuths, and that number has been a constant since this site's first commit. Tripling it changes nothing at the two rises the collection argues from — five runs of five, identical readings — and changes which answer appears at the one rise published as having no answer. A parameter of the program, measured rather than assumed.

emergence · Instrument ceiling

A rule that cannot heal a hole

The placement rule corrects itself against a displacement — that is what the lag-one correlation of −0.6 has been saying since it was measured. It does not correct itself against a deletion. Which organ is removed decides whether the stem is back on its lattice in twenty-four organs or never, and the boundary between the two is sharp, reproducible and in the middle of the front.

emergence · Ablation

Matching instead of correcting

Two rounds of work failed on one question because every instrument's free parameter was set by the thing under test. The repair was not a better instrument or a model of the bias: it was choosing what to compare so that the confound could not vary. That move is available in four other places here, and three of them have already used it without anybody naming it.

wrong · Instrument ceiling

A disturbance the organs share

This collection has put three kinds of noise into the placement rule and found the lattice fails at about the same recorded scatter whichever kind it was. None of them asked what happens when the displacements are correlated between organs. At equal displacement per organ, a lattice survives three times as much of a disturbance the organs share — and what a protractor records is the part they do not.

emergence · Noise amplitude

The disturbance that travels

If a lattice survives three times the displacement when the organs share it, then a disturbance passed between the organs that actually touch should be the gentlest of all — it is correlated at exactly the offsets the rule places against. It is the harshest. Half the displacement destroys what independent noise leaves standing, and the reason separates two things that had been one.

emergence · Noise colour

A front with no middle

Take one organ out of a stem and the pattern sometimes never comes back — but that was measured on a front thirteen organs wide, where five of the thirteen offsets are beyond repair. Repeat it on a front of five and every single ablation heals. The band that cannot be undone is not a number the rule carries; it is what two fixed edges leave over.

emergence · Ablation

The block is the count it was cut from

A stem that never recovers from an ablation settles into a repeating block of eight angles precessing by 22.7°. Eight was also the smaller parastichy number of the lattice that was cut, which left two possibilities and no way to choose between them. Cut a stem one rung coarser and the block is five.

emergence · Attractor

Six of six is not a measurement

A panel comparing two rules seed by seed reported the deeper one winning every one of six seeds at four correlation lengths out of six, and was read as a lattice with no corner in it. Six of six is the largest number the panel can print, so the flat middle was a reading of the ceiling — and raising the disturbance brings a corner out of it.

emergence · Noise colour

Named alongside it

The objects these essays reach for when they reach for this one.

MeasurementDivergence angleNoiseThe placement ruleAutocorrelationHonest limitsArtefactEquilibriumParastichy pairRiseIdentifiabilitySummary statistic

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